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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GAC
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254795 (4 seq.)
>W1710917324
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
20131
20055
-
Val
GAC
[ENA]
¡û
>W1710917330
LNVX01000450
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
365
289
-
Val
GAC
[ENA]
¡û
>WENV170715830
LQAB01016855
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
674
750
+
Val
GAC
[ENA]
¢þ
>WENV170715888
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
7137
7061
-
Val
GAC
[ENA]
¢þ
Identical group No.266541 (1 seq.)
>W1711583357
MNXB01000117
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17473
17398
-
Val
GAC
[ENA]
¡û
Identical group No.276809 (1 seq.)
>W1711412836
MGVC01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
163185
163112
-
Val
GAC
[ENA]
¡û
Identical group No.282940 (3 seq.)
>C08011141
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
747364
747289
-
Val
GAC
-
¡û
>C181002098
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
737760
737685
-
Val
GAC
-
¡û
>ENV000867
AP009510
Environmental sample from ENV division of INSDC
747364
747286
-
Val
GAC
[ENA]
Identical group No.350338 (5 seq.)
>W1711412713
MGUY01000148
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
7634
7559
-
Val
GAC
[ENA]
¡û
>W1711412750
MGUZ01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
67047
67122
+
Val
GAC
[ENA]
¡û
>W1711412935
MGVE01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
79863
79938
+
Val
GAC
[ENA]
¡û
>W1711413071
MGVJ01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
30051
29976
-
Val
GAC
[ENA]
¡û
>W1711413160
MGVL01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
79527
79602
+
Val
GAC
[ENA]
¡û
Identical group No.361942 (2 seq.)
>W1711412894
MGVD01000111
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
725
649
-
Val
GAC
[ENA]
¡û
>W1711413174
MGVM01000091
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
6329
6256
-
Val
GAC
[ENA]
¡û
Identical group No.361950 (1 seq.)
>W1711413219
MGVN01000141
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
7362
7289
-
Val
GAC
[ENA]
¡û
Identical group No.382208 (1 seq.)
>W1711412959
MGVF01000121
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
5
78
+
Val
GAC
[ENA]
¡û
Identical group No.388716 (1 seq.)
>W1910727549
MGUM01000076
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
989
1062
+
Val
GAC
[ENA]
¡û
Identical group No.397834 (1 seq.)
>W1910727681
MGUQ01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
14023
14099
+
Val
GAC
[ENA]
¡û
Identical group No.415185 (1 seq.)
>C151053011
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
525028
525101
+
Val
GAC
[Ensembl]
¡û
Identical group No.423010 (1 seq.)
>W1730028220
MGVS01000083
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
17175
17100
-
Val
GAC
[ENA]
¡û
Identical group No.440495 (1 seq.)
>W1711413280
MGVP01000152
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
943
1019
+
Val
GAC
[ENA]
¡û
Identical group No.611621 (1 seq.)
>W1910727728
MGUR01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
25311
25386
+
Val
GAC
[ENA]
¡û
Identical group No.639316 (1 seq.)
>W1910727779
MGUS01000114
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4390
4462
+
Val
GAC
[ENA]
¡û
Identical group No.656690 (3 seq.)
>W1711412176
MGTX01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
80057
80131
+
Val
GAC
[ENA]
¡û
>W1711412509
MGUH01000072
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
9833
9759
-
Val
GAC
[ENA]
¡û
>WENV170556034
CXWL01004017
[CXWL] groundwater metagenome; biofilm material
82979
83053
+
Val
GAC
[ENA]
¢þ
Identical group No.656778 (17 seq.)
>W1711411968
MGTS01000033
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
43975
43901
-
Val
GAC
[ENA]
¡û
>W1711412042
MGTU01000017
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
26377
26451
+
Val
GAC
[ENA]
¡û
>W1711412067
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
85691
85765
+
Val
GAC
[ENA]
¡û
>W1711412121
MGTW01000049
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
18892
18966
+
Val
GAC
[ENA]
¡û
>W1711412295
MGUA01000044
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
2425
2351
-
Val
GAC
[ENA]
¡û
>W1711412320
MGUB01000107
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
5903
5829
-
Val
GAC
[ENA]
¡û
>W1711412410
MGUE01000035
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
26826
26900
+
Val
GAC
[ENA]
¡û
>W1711412437
MGUF01000045
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
17067
16993
-
Val
GAC
[ENA]
¡û
>W1711412490
MGUG01000059
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
18943
19017
+
Val
GAC
[ENA]
¡û
>W1711412532
MGUI01000002
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
2909
2835
-
Val
GAC
[ENA]
¡û
>W1711412577
MGUJ01000024
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
6699
6625
-
Val
GAC
[ENA]
¡û
>W1711412618
MGUK01000044
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
88303
88229
-
Val
GAC
[ENA]
¡û
>W1711412819
MGVB01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
7267
7193
-
Val
GAC
[ENA]
¡û
>W1711413030
MGVH01000067
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
12957
12883
-
Val
GAC
[ENA]
¡û
>W1711581874
MNUR01000018
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
7863
7789
-
Val
GAC
[ENA]
¡û
>WENV183688436
ORMF011290173
[ORMF] groundwater metagenome; groundwater
65
139
+
Val
GAC
[ENA]
¢þ
>W1910727640
MGUP01000164
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
105
31
-
Val
GAC
[ENA]
¡û
Identical group No.656784 (4 seq.)
>W1711411986
MGTT01000007
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
3650
3724
+
Val
GAC
[ENA]
¡û
>W1711412368
MGUC01000035
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
31668
31594
-
Val
GAC
[ENA]
¡û
>W1711412769
MGVA01000030
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
3185
3259
+
Val
GAC
[ENA]
¡û
>W1711412970
MGVG01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
97022
96948
-
Val
GAC
[ENA]
¡û
Identical group No.660484 (2 seq.)
>C08004645
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
292946
293020
+
Val
GAC
[Ensembl]
¡û
>W09107464
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
303242
303316
+
Val
GAC
[ENA]
¡û
Identical group No.670920 (3 seq.)
>W1910727577
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
266523
266450
-
Val
GAC
[ENA]
¡û
>W1910727822
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
266514
266441
-
Val
GAC
[ENA]
¡û
>W1910727894
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
266526
266453
-
Val
GAC
[ENA]
¡û
Identical group No.682085 (2 seq.)
>W1712038712
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
415599
415673
+
Val
GAC
[ENA]
¡û
>WENV183645193
OQVQ01001656
[OQVQ] human gut metagenome; human gut
751
825
+
Val
GAC
[ENA]
¢þ
Identical group No.721029 (3 seq.)
>W1711412665
MGUL01000105
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
27947
28021
+
Val
GAC
[ENA]
¡û
>WENV180265348
OBEQ011651489
[OBEQ] groundwater metagenome; groundwater
53431
53505
+
Val
GAC
[ENA]
¢þ
>WENV180266319
OBEQ011742847
[OBEQ] groundwater metagenome; groundwater
77
3
-
Val
GAC
[ENA]
¢þ
Identical group No.727686 (3 seq.)
>W1711413347
MGVR01000234
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
4080
4006
-
Val
GAC
[ENA]
¡û
>WENV180252318
OBEQ010440450
[OBEQ] groundwater metagenome; groundwater
204
278
+
Val
GAC
[ENA]
¢þ
>WENV183693082
ORMF012020556
[ORMF] groundwater metagenome; groundwater
324
250
-
Val
GAC
[ENA]
¢þ
Identical group No.736590 (5 seq.)
>WENV180254110
OBEQ010602627
[OBEQ] groundwater metagenome; groundwater
271
345
+
Val
GAC
[ENA]
¢þ
>WENV180354358
OBLQ011654001
[OBLQ] soil metagenome; soil
92
18
-
Val
GAC
[ENA]
¢þ
>WENV181231008
OFEK01007231
[OFEK] activated sludge metagenome; Anaerobic digester
2209
2135
-
Val
GAC
[ENA]
¢þ
>WENV181692089
OGOZ01061774
[OGOZ] human gut metagenome; faeces
431
505
+
Val
GAC
[ENA]
¢þ
>W1910727598
MGUO01000012
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
6002
6076
+
Val
GAC
[ENA]
¡û
Identical group No.752185 (1 seq.)
>W1711581926
MNUS01000060
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
60918
60844
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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