This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GGT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361947 (1 seq.)
>W1711413212
MGVN01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
208
135
-
Thr
GGT
[ENA]
¡û
Identical group No.458028 (2 seq.)
>W1711412148
MGTX01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
195
123
-
Thr
GGT
[ENA]
¡û
>W1711412520
MGUH01000103
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
153
81
-
Thr
GGT
[ENA]
¡û
Identical group No.458180 (3 seq.)
>W1711412783
MGVA01000040
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
15962
16034
+
Thr
GGT
[ENA]
¡û
>W1711412982
MGVG01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
273
201
-
Thr
GGT
[ENA]
¡û
>W1910727662
MGUP01000932
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
299
227
-
Thr
GGT
[ENA]
¡û
Identical group No.458189 (1 seq.)
>W1711412866
MGVC01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
164
92
-
Thr
GGT
[ENA]
¡û
Identical group No.458195 (2 seq.)
>W1711413300
MGVQ01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
8874
8946
+
Thr
GGT
[ENA]
¡û
>W1711413407
MGVT01000060
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
9969
9897
-
Thr
GGT
[ENA]
¡û
Identical group No.464829 (3 seq.)
>C08004666
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1592634
1592562
-
Thr
GGT
[Ensembl]
¡û
>WENV183645382
OQVQ01005173
[OQVQ] human gut metagenome; human gut
935
1007
+
Thr
GGT
[ENA]
¢þ
>W09107449
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
40633
40705
+
Thr
GGT
[ENA]
¡û
Identical group No.481760 (4 seq.)
>W1711411920
MGTR01000062
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
2333
2408
+
Thr
GGT
[ENA]
¡û
>W1910727567
MGUN01000015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
122112
122187
+
Thr
GGT
[ENA]
¡û
>W1910727853
MGUU01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
75008
74933
-
Thr
GGT
[ENA]
¡û
>W1910727883
MGUW01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
75023
74948
-
Thr
GGT
[ENA]
¡û
Identical group No.500881 (16 seq.)
>W1712038716
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
571541
571613
+
Thr
GGT
[ENA]
¡û
>W1712038717
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
571655
571727
+
Thr
GGT
[ENA]
¡û
>WENV180231373
OBCN01015984
[OBCN] human gut metagenome; human gut
165
93
-
Thr
GGT
[ENA]
¢þ
>WENV180405068
OBSA01161532
[OBSA] human gut metagenome; ENVO:feces
171
99
-
Thr
GGT
[ENA]
¢þ
>WENV180598037
OCPL01143946
[OCPL] human gut metagenome; ENVO:feces
97
25
-
Thr
GGT
[ENA]
¢þ
>WENV181647863
OGNQ01001216
[OGNQ] metagenome; Human gut stool
12818
12890
+
Thr
GGT
[ENA]
¢þ
>WENV182658473
OJML01000037
[OJML] human gut metagenome; feces
78927
78999
+
Thr
GGT
[ENA]
¢þ
>WENV182658474
OJML01000037
[OJML] human gut metagenome; feces
79043
79115
+
Thr
GGT
[ENA]
¢þ
>WENV183070897
OLIS01001190
[OLIS] human gut metagenome; feces
18901
18973
+
Thr
GGT
[ENA]
¢þ
>WENV183640317
OQVL01003081
[OQVL] human gut metagenome; human gut
2916
2988
+
Thr
GGT
[ENA]
¢þ
>WENV183643254
OQVO01005325
[OQVO] human gut metagenome; human gut
832
760
-
Thr
GGT
[ENA]
¢þ
>WENV183645355
OQVQ01004715
[OQVQ] human gut metagenome; human gut
91
163
+
Thr
GGT
[ENA]
¢þ
>WENV183645356
OQVQ01004715
[OQVQ] human gut metagenome; human gut
201
273
+
Thr
GGT
[ENA]
¢þ
>WENV183651362
OQVT01136622
[OQVT] human gut metagenome; human gut
182
110
-
Thr
GGT
[ENA]
¢þ
>WENV183654222
OQWA01016047
[OQWA] human gut metagenome; human gut
152
224
+
Thr
GGT
[ENA]
¢þ
>WENV183657583
OQWI01019491
[OQWI] human gut metagenome; human gut
1618
1690
+
Thr
GGT
[ENA]
¢þ
Identical group No.508674 (1 seq.)
>W1711412202
MGTY01000081
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
253
181
-
Thr
GGT
[ENA]
¡û
Identical group No.508737 (2 seq.)
>W1711412821
MGVB01000118
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
1784
1712
-
Thr
GGT
[ENA]
¡û
>W1711413046
MGVH01000141
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
1314
1242
-
Thr
GGT
[ENA]
¡û
Identical group No.508902 (1 seq.)
>W1711581909
MNUR01000118
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
36057
36129
+
Thr
GGT
[ENA]
¡û
Identical group No.526863 (2 seq.)
>W1711411971
MGTS01000038
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
262
190
-
Thr
GGT
[ENA]
¡û
>W1711412593
MGUJ01000111
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
302
230
-
Thr
GGT
[ENA]
¡û
Identical group No.539215 (5 seq.)
>W1711412712
MGUY01000139
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
5341
5413
+
Thr
GGT
[ENA]
¡û
>W1711412733
MGUZ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
65483
65555
+
Thr
GGT
[ENA]
¡û
>W1711412920
MGVE01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
102964
103036
+
Thr
GGT
[ENA]
¡û
>W1711413093
MGVK01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
63564
63636
+
Thr
GGT
[ENA]
¡û
>W1711413142
MGVL01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
103012
103084
+
Thr
GGT
[ENA]
¡û
Identical group No.551787 (1 seq.)
>W1730028188
MGUK01000056
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
1711
1639
-
Thr
GGT
[ENA]
¡û
Identical group No.552131 (2 seq.)
>W1711412891
MGVD01000100
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
5871
5943
+
Thr
GGT
[ENA]
¡û
>W1711413190
MGVM01000212
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
7139
7211
+
Thr
GGT
[ENA]
¡û
Identical group No.564112 (3 seq.)
>W1711412134
MGTW01000073
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
265
193
-
Thr
GGT
[ENA]
¡û
>W1711412248
MGTZ01000053
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
27032
27104
+
Thr
GGT
[ENA]
¡û
>W1711412271
MGUA01000017
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
10314
10386
+
Thr
GGT
[ENA]
¡û
Identical group No.564181 (2 seq.)
>W1711412652
MGUL01000039
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
201
129
-
Thr
GGT
[ENA]
¡û
>WENV170556866
CXWL01015321
[CXWL] groundwater metagenome; biofilm material
8782
8854
+
Thr
GGT
[ENA]
¢þ
Identical group No.574734 (2 seq.)
>W1711412018
MGTT01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
88547
88619
+
Thr
GGT
[ENA]
¡û
>W1711412354
MGUC01000025
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
296
224
-
Thr
GGT
[ENA]
¡û
Identical group No.574738 (2 seq.)
>W1711412964
MGVF01000135
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
30000
30072
+
Thr
GGT
[ENA]
¡û
>W1711413264
MGVO01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
37290
37362
+
Thr
GGT
[ENA]
¡û
Identical group No.582268 (2 seq.)
>W1910727552
MGUM01000087
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
959
887
-
Thr
GGT
[ENA]
¡û
>W1910727800
MGUT01000061
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
12014
11942
-
Thr
GGT
[ENA]
¡û
Identical group No.592605 (2 seq.)
>WENV180256159
OBEQ010789720
[OBEQ] groundwater metagenome; groundwater
351
426
+
Thr
GGT
[ENA]
¢þ
>W1910727679
MGUQ01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
743
818
+
Thr
GGT
[ENA]
¡û
Identical group No.594482 (2 seq.)
>W1711412062
MGTV01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
619
547
-
Thr
GGT
[ENA]
¡û
>W1711412551
MGUI01000038
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
314
242
-
Thr
GGT
[ENA]
¡û
Identical group No.611614 (1 seq.)
>W1910727657
MGUP01000819
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
474
546
+
Thr
GGT
[ENA]
¡û
Identical group No.613463 (1 seq.)
>W1711581938
MNUS01000127
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
19458
19530
+
Thr
GGT
[ENA]
¡û
Identical group No.621298 (1 seq.)
>W1711413364
MGVS01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
172
244
+
Thr
GGT
[ENA]
¡û
Identical group No.639312 (1 seq.)
>W1910727749
MGUS01000001
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
3535
3610
+
Thr
GGT
[ENA]
¡û
Identical group No.652905 (1 seq.)
>W1910727615
MGUO01000167
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
221
149
-
Thr
GGT
[ENA]
¡û
Identical group No.657270 (2 seq.)
>WENV170716352
LSPZ01006731
[LSPZ] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 2
179
250
+
Thr
GGT
[ENA]
¢þ
>C151053032
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
964542
964471
-
Thr
GGT
[Ensembl]
¡û
Identical group No.660455 (2 seq.)
>C08011117
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
347651
347722
+
Thr
GGT
-
¡û
>ENV000854
AP009510
Environmental sample from ENV division of INSDC
347651
347725
+
Thr
GGT
[ENA]
Identical group No.713825 (2 seq.)
>W1710917288
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
72866
72795
-
Thr
GGT
[ENA]
¡û
>WENV170715717
LQAB01012216
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
21929
21858
-
Thr
GGT
[ENA]
¢þ
Identical group No.752183 (1 seq.)
>W1711581921
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
7910
7984
+
Thr
GGT
[ENA]
¡û
Identical group No.760526 (2 seq.)
>WENV170558020
CXWL01046479
[CXWL] groundwater metagenome; biofilm material
1441
1370
-
Thr
GGT
[ENA]
¢þ
>W1910727600
MGUO01000018
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
65
136
+
Thr
GGT
[ENA]
¡û
Identical group No.761742 (1 seq.)
>W1711583338
MNXB01000051
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
239
313
+
Thr
GGT
[ENA]
¡û
Identical group No.775085 (1 seq.)
>C181002074
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
338714
338785
+
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK