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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TCC
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.713539 (1 seq.)
>W1711413211
MGVN01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
282
211
-
Gly
TCC
[ENA]
¡û
Identical group No.751917 (1 seq.)
>W1720003028
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
6024
6098
+
Gly
TCC
[ENA]
¡û
Identical group No.781000 (6 seq.)
>W1711412147
MGTX01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
280
207
-
Gly
TCC
[ENA]
¡û
>W1711412519
MGUH01000103
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
238
165
-
Gly
TCC
[ENA]
¡û
>W1711412651
MGUL01000039
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
287
214
-
Gly
TCC
[ENA]
¡û
>WENV180259891
OBEQ011150148
[OBEQ] groundwater metagenome; groundwater
3577
3648
+
Gly
TCC
[ENA]
¢þ
>WENV170556865
CXWL01015321
[CXWL] groundwater metagenome; biofilm material
8688
8761
+
Gly
TCC
[ENA]
¢þ
>W1910727614
MGUO01000167
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
316
243
-
Gly
TCC
[ENA]
¡û
Identical group No.781040 (5 seq.)
>W1711412133
MGTW01000073
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
602
532
-
Gly
TCC
[ENA]
¡û
>W1711412247
MGTZ01000053
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
26696
26766
+
Gly
TCC
[ENA]
¡û
>W1711412270
MGUA01000017
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
10074
10144
+
Gly
TCC
[ENA]
¡û
>W1711412452
MGUG01000003
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
11278
11348
+
Gly
TCC
[ENA]
¡û
>W1711412623
MGUK01000056
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
1981
1911
-
Gly
TCC
[ENA]
¡û
Identical group No.781046 (8 seq.)
>W1711412782
MGVA01000040
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
15822
15892
+
Gly
TCC
[ENA]
¡û
>W1711412981
MGVG01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
413
343
-
Gly
TCC
[ENA]
¡û
>W1712038715
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
571435
571505
+
Gly
TCC
[ENA]
¡û
>WENV181647862
OGNQ01001216
[OGNQ] metagenome; Human gut stool
12726
12796
+
Gly
TCC
[ENA]
¢þ
>WENV182658472
OJML01000037
[OJML] human gut metagenome; feces
78817
78887
+
Gly
TCC
[ENA]
¢þ
>WENV183070896
OLIS01001190
[OLIS] human gut metagenome; feces
18791
18861
+
Gly
TCC
[ENA]
¢þ
>WENV183640316
OQVL01003081
[OQVL] human gut metagenome; human gut
2824
2894
+
Gly
TCC
[ENA]
¢þ
>WENV183643253
OQVO01005325
[OQVO] human gut metagenome; human gut
924
854
-
Gly
TCC
[ENA]
¢þ
Identical group No.781052 (1 seq.)
>W1711412865
MGVC01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
397
327
-
Gly
TCC
[ENA]
¡û
Identical group No.781054 (26 seq.)
>W1711413327
MGVQ01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
3845
3915
+
Gly
TCC
[ENA]
¡û
>W1711413374
MGVS01000031
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
49242
49312
+
Gly
TCC
[ENA]
¡û
>W1711413419
MGVT01000114
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
5030
5100
+
Gly
TCC
[ENA]
¡û
>WENV180133867
OATJ01005773
[OATJ] human gut metagenome; faeces
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180145303
OAUC01000576
[OAUC] human gut metagenome; faeces
16
86
+
Gly
TCC
[ENA]
¢þ
>WENV181342068
OFMI01001709
[OFMI] human gut metagenome; human gut
299
228
-
Gly
TCC
[ENA]
¢þ
>WENV181436861
OGDF01036496
[OGDF] human gut metagenome; human gut
2127
2057
-
Gly
TCC
[ENA]
¢þ
>WENV181776341
OGRG01000984
[OGRG] human gut metagenome; faeces
19133
19203
+
Gly
TCC
[ENA]
¢þ
>WENV182300433
OHWM01004306
[OHWM] human gut metagenome; feces
473
402
-
Gly
TCC
[ENA]
¢þ
>WENV182518402
OIWP01000706
[OIWP] human gut metagenome; faeces
30933
31003
+
Gly
TCC
[ENA]
¢þ
>WENV182923276
OKUE01009636
[OKUE] human gut metagenome; feces
1141
1070
-
Gly
TCC
[ENA]
¢þ
>WENV183025602
OLFT01029911
[OLFT] human gut metagenome; faeces
105
176
+
Gly
TCC
[ENA]
¢þ
>WENV183030641
OLFX01000243
[OLFX] human gut metagenome; faeces
13067
12996
-
Gly
TCC
[ENA]
¢þ
>WENV183049177
OLGH01002808
[OLGH] human gut metagenome; faeces
827
757
-
Gly
TCC
[ENA]
¢þ
>WENV183104580
OLNK01000693
[OLNK] human gut metagenome; faeces
20583
20513
-
Gly
TCC
[ENA]
¢þ
>WENV183118896
OLNT01000693
[OLNT] human gut metagenome; faeces
63
133
+
Gly
TCC
[ENA]
¢þ
>WENV183134911
OLOD01006998
[OLOD] human gut metagenome; faeces
338
268
-
Gly
TCC
[ENA]
¢þ
>WENV183149476
OLOO01006536
[OLOO] human gut metagenome; faeces
627
557
-
Gly
TCC
[ENA]
¢þ
>WENV183248910
OLRG01000416
[OLRG] human gut metagenome; faeces
30326
30255
-
Gly
TCC
[ENA]
¢þ
>WENV183400408
OLZR01005759
[OLZR] human gut metagenome; feces
2864
2934
+
Gly
TCC
[ENA]
¢þ
>W1810811075
QRXY01000001
Bacillota
Coprococcus comes AF16-31 [QRXY]
11155
11225
+
Gly
TCC
[ENA]
¡û
>W1810823341
QSGT01000021
Bacillota
Blautia obeum AM39-5AC [QSGT]
54059
53989
-
Gly
TCC
[ENA]
¡û
>W1810864538
QTWE01000010
Bacillota
Ruminococcus sp. AF25-3LB [QTWE]
43656
43726
+
Gly
TCC
[ENA]
¡û
>W1810864636
QTWG01000014
Bacillota
Ruminococcus sp. AF25-17 [QTWG]
26983
26913
-
Gly
TCC
[ENA]
¡û
>W1610104427
CZBR01000011
Bacillota
[Ruminococcus] torques [CZBR]
108341
108271
-
Gly
TCC
[ENA]
¡û
>W1710107131
CZBR01000011
Bacillota
[Ruminococcus] torques [CZBR]
108341
108271
-
Gly
TCC
[ENA]
¡û
Identical group No.782526 (3 seq.)
>C08011116
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
347553
347623
+
Gly
TCC
-
¡û
>C181002073
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
338617
338687
+
Gly
TCC
-
¡û
>ENV000853
AP009510
Environmental sample from ENV division of INSDC
347553
347626
+
Gly
TCC
[ENA]
Identical group No.782538 (2 seq.)
>C08004665
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1592774
1592704
-
Gly
TCC
[Ensembl]
¡û
>W09107448
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
40493
40563
+
Gly
TCC
[ENA]
¡û
Identical group No.787333 (4 seq.)
>W1711411906
MGTR01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
7682
7609
-
Gly
TCC
[ENA]
¡û
>W1910727576
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
357585
357512
-
Gly
TCC
[ENA]
¡û
>W1910727821
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
357576
357503
-
Gly
TCC
[ENA]
¡û
>W1910727893
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
357588
357515
-
Gly
TCC
[ENA]
¡û
Identical group No.794457 (5 seq.)
>W1711412059
MGTU01000033
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
594
524
-
Gly
TCC
[ENA]
¡û
>W1711412416
MGUE01000044
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
751
681
-
Gly
TCC
[ENA]
¡û
>WENV183670014
ORJL010899324
[ORJL] groundwater metagenome; groundwater
255
185
-
Gly
TCC
[ENA]
¢þ
>WENV183690542
ORMF011613139
[ORMF] groundwater metagenome; groundwater
952
882
-
Gly
TCC
[ENA]
¢þ
>W1910727661
MGUP01000932
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
542
472
-
Gly
TCC
[ENA]
¡û
Identical group No.794460 (2 seq.)
>W1711412201
MGTY01000081
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
592
519
-
Gly
TCC
[ENA]
¡û
>WENV183693027
ORMF012009235
[ORMF] groundwater metagenome; groundwater
333
406
+
Gly
TCC
[ENA]
¢þ
Identical group No.794478 (2 seq.)
>W1711412820
MGVB01000118
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
2047
1977
-
Gly
TCC
[ENA]
¡û
>W1711413045
MGVH01000141
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
1577
1507
-
Gly
TCC
[ENA]
¡û
Identical group No.794527 (1 seq.)
>W1711581908
MNUR01000118
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
35909
35979
+
Gly
TCC
[ENA]
¡û
Identical group No.795954 (3 seq.)
>WENV180660316
OCVV010923186
[OCVV] gut metagenome; gut
7581
7652
+
Gly
TCC
[ENA]
¢þ
>WENV180660319
OCVV010923186
[OCVV] gut metagenome; gut
7581
7652
+
Gly
TCC
[ENA]
¢þ
>C151053031
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
964719
964649
-
Gly
TCC
[Ensembl]
¡û
Identical group No.799550 (2 seq.)
>W1711411970
MGTS01000038
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
336
265
-
Gly
TCC
[ENA]
¡û
>W1711412592
MGUJ01000111
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
376
305
-
Gly
TCC
[ENA]
¡û
Identical group No.802870 (6 seq.)
>W1711412711
MGUY01000139
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
4623
4693
+
Gly
TCC
[ENA]
¡û
>W1711412732
MGUZ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
64760
64830
+
Gly
TCC
[ENA]
¡û
>W1711412919
MGVE01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
102241
102311
+
Gly
TCC
[ENA]
¡û
>W1711413087
MGVJ01000122
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
660
730
+
Gly
TCC
[ENA]
¡û
>W1711413092
MGVK01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
62841
62911
+
Gly
TCC
[ENA]
¡û
>W1711413141
MGVL01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
102289
102359
+
Gly
TCC
[ENA]
¡û
Identical group No.806459 (1 seq.)
>W1711412890
MGVD01000100
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
5748
5818
+
Gly
TCC
[ENA]
¡û
Identical group No.806607 (2 seq.)
>W1710917287
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
72962
72892
-
Gly
TCC
[ENA]
¡û
>WENV170715716
LQAB01012216
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
22025
21955
-
Gly
TCC
[ENA]
¢þ
Identical group No.806621 (2 seq.)
>W1710917277
LNVX01000290
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
7564
7634
+
Gly
TCC
[ENA]
¡û
>WENV170715904
LQAB01019798
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
163
93
-
Gly
TCC
[ENA]
¢þ
Identical group No.813061 (5 seq.)
>W1711412017
MGTT01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
88365
88438
+
Gly
TCC
[ENA]
¡û
>W1711412353
MGUC01000025
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
478
405
-
Gly
TCC
[ENA]
¡û
>W1711412550
MGUI01000038
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
520
449
-
Gly
TCC
[ENA]
¡û
>WENV180294741
OBIY01445252
[OBIY] beach sand metagenome; beach sand
91
20
-
Gly
TCC
[ENA]
¢þ
>WENV170778585
LXOW01417858
[LXOW] bovine gut metagenome; Cow rumen
254
181
-
Gly
TCC
[ENA]
¢þ
Identical group No.813064 (2 seq.)
>W1711412963
MGVF01000135
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
29827
29897
+
Gly
TCC
[ENA]
¡û
>W1711413263
MGVO01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
37117
37187
+
Gly
TCC
[ENA]
¡û
Identical group No.817124 (2 seq.)
>W1711412061
MGTV01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
886
816
-
Gly
TCC
[ENA]
¡û
>WENV181231329
OFEK01020184
[OFEK] activated sludge metagenome; Anaerobic digester
544
474
-
Gly
TCC
[ENA]
¢þ
Identical group No.818212 (1 seq.)
>W1910727705
MGUQ01000092
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
11868
11941
+
Gly
TCC
[ENA]
¡û
Identical group No.823819 (1 seq.)
>W1910727656
MGUP01000819
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
398
471
+
Gly
TCC
[ENA]
¡û
Identical group No.824277 (1 seq.)
>W1711413189
MGVM01000212
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
6887
6959
+
Gly
TCC
[ENA]
¡û
Identical group No.824318 (2 seq.)
>W1711581937
MNUS01000127
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
19376
19449
+
Gly
TCC
[ENA]
¡û
>WENV183696008
ORMF012485962
[ORMF] groundwater metagenome; groundwater
348
421
+
Gly
TCC
[ENA]
¢þ
Identical group No.828457 (1 seq.)
>W1730031959
MNXB01000122
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17431
17501
+
Gly
TCC
[ENA]
¡û
Identical group No.833398 (1 seq.)
>W1930015932
MGUS01000133
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4120
4190
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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