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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TGA
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30780 (4 seq.)
>W1711412277
MGUA01000027
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
115520
115610
+
Ser
TGA
[ENA]
¡û
>W1711412467
MGUG01000020
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
88583
88670
+
Ser
TGA
[ENA]
¡û
>W1711412556
MGUI01000044
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
27758
27668
-
Ser
TGA
[ENA]
¡û
>W1711412628
MGUK01000080
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
61956
61867
-
Ser
TGA
[ENA]
¡û
Identical group No.33100 (3 seq.)
>W1711411941
MGTS01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
7759
7669
-
Ser
TGA
[ENA]
¡û
>W1711412300
MGUB01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
15001
15091
+
Ser
TGA
[ENA]
¡û
>W1711412606
MGUJ01000154
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
2870
2960
+
Ser
TGA
[ENA]
¡û
Identical group No.34411 (2 seq.)
>W1910727669
MGUP01001000
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
4667
4757
+
Ser
TGA
[ENA]
¡û
>W1910727861
MGUV01000103
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
4281
4191
-
Ser
TGA
[ENA]
¡û
Identical group No.34673 (3 seq.)
>W1711412027
MGTU01000007
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
310
220
-
Ser
TGA
[ENA]
¡û
>W1711412398
MGUE01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
32076
31986
-
Ser
TGA
[ENA]
¡û
>W1711413295
MGVP01000780
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
4945
4855
-
Ser
TGA
[ENA]
¡û
Identical group No.34674 (1 seq.)
>W1711412197
MGTY01000059
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
694
604
-
Ser
TGA
[ENA]
¡û
Identical group No.34677 (2 seq.)
>W1711412807
MGVB01000054
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
9308
9218
-
Ser
TGA
[ENA]
¡û
>W1711413038
MGVH01000106
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
3097
3007
-
Ser
TGA
[ENA]
¡û
Identical group No.34695 (1 seq.)
>W1711581895
MNUR01000075
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
1741
1652
-
Ser
TGA
[ENA]
¡û
Identical group No.38074 (1 seq.)
>W1711413208
MGVN01000087
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
4779
4866
+
Ser
TGA
[ENA]
¡û
Identical group No.39876 (2 seq.)
>W1711412113
MGTW01000036
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
108274
108364
+
Ser
TGA
[ENA]
¡û
>W1711412234
MGTZ01000038
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
69986
70076
+
Ser
TGA
[ENA]
¡û
Identical group No.43874 (1 seq.)
>W1711412097
MGTV01000049
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
123198
123285
+
Ser
TGA
[ENA]
¡û
Identical group No.45620 (1 seq.)
>W1910727612
MGUO01000137
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
2052
1964
-
Ser
TGA
[ENA]
¡û
Identical group No.46433 (2 seq.)
>W1711412173
MGTX01000026
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
37376
37465
+
Ser
TGA
[ENA]
¡û
>W1711412499
MGUH01000044
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
10824
10735
-
Ser
TGA
[ENA]
¡û
Identical group No.46453 (2 seq.)
>W1711412793
MGVA01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
127336
127250
-
Ser
TGA
[ENA]
¡û
>W1711413006
MGVG01000053
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
127383
127297
-
Ser
TGA
[ENA]
¡û
Identical group No.46455 (2 seq.)
>W1711412854
MGVC01000049
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
42263
42351
+
Ser
TGA
[ENA]
¡û
>W1711412888
MGVD01000091
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
1001
1089
+
Ser
TGA
[ENA]
¡û
Identical group No.46456 (2 seq.)
>W1711413319
MGVQ01000084
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
2309
2221
-
Ser
TGA
[ENA]
¡û
>W1711413409
MGVT01000067
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
237
325
+
Ser
TGA
[ENA]
¡û
Identical group No.47360 (6 seq.)
>W1710917343
LNVX01000547
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1168
1078
-
Ser
TGA
[ENA]
¡û
>C08011111
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
34638
34727
+
Ser
TGA
-
¡û
>WENV170715424
LQAB01000140
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
302
391
+
Ser
TGA
[ENA]
¢þ
>WENV170715909
LQAB01020016
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
711
621
-
Ser
TGA
[ENA]
¢þ
>C181002068
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
34159
34248
+
Ser
TGA
-
¡û
>ENV000840
AP009510
Environmental sample from ENV division of INSDC
34638
34727
+
Ser
TGA
[ENA]
Identical group No.47366 (2 seq.)
>C08004647
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
354417
354505
+
Ser
TGA
[Ensembl]
¡û
>W09107466
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
364717
364805
+
Ser
TGA
[ENA]
¡û
Identical group No.49278 (5 seq.)
>W1711411930
MGTR01000109
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
5886
5975
+
Ser
TGA
[ENA]
¡û
>WENV180267886
OBEQ011906365
[OBEQ] groundwater metagenome; groundwater
2003
1914
-
Ser
TGA
[ENA]
¢þ
>W1910727597
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
33737
33648
-
Ser
TGA
[ENA]
¡û
>W1910727836
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
33775
33686
-
Ser
TGA
[ENA]
¡û
>W1910727910
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
33778
33689
-
Ser
TGA
[ENA]
¡û
Identical group No.56814 (6 seq.)
>W1711412699
MGUY01000046
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
8245
8157
-
Ser
TGA
[ENA]
¡û
>W1711412720
MGUZ01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
43381
43293
-
Ser
TGA
[ENA]
¡û
>W1711412908
MGVE01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
289768
289856
+
Ser
TGA
[ENA]
¡û
>W1711413065
MGVJ01000027
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
8234
8146
-
Ser
TGA
[ENA]
¡û
>W1711413113
MGVK01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
17252
17340
+
Ser
TGA
[ENA]
¡û
>W1711413137
MGVL01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
49342
49430
+
Ser
TGA
[ENA]
¡û
Identical group No.58593 (2 seq.)
>W1710917266
LNVX01000224
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
37258
37347
+
Ser
TGA
[ENA]
¡û
>WENV170715807
LQAB01015904
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
15595
15684
+
Ser
TGA
[ENA]
¢þ
Identical group No.60216 (2 seq.)
>W1711412677
MGUL01000140
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
8327
8241
-
Ser
TGA
[ENA]
¡û
>WENV180260302
OBEQ011188485
[OBEQ] groundwater metagenome; groundwater
899
987
+
Ser
TGA
[ENA]
¢þ
Identical group No.61553 (2 seq.)
>W1711412003
MGTT01000022
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
23536
23624
+
Ser
TGA
[ENA]
¡û
>W1711412338
MGUC01000016
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
19642
19730
+
Ser
TGA
[ENA]
¡û
Identical group No.61562 (1 seq.)
>W1711413351
MGVR01000323
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
7187
7276
+
Ser
TGA
[ENA]
¡û
Identical group No.64069 (1 seq.)
>W1910727683
MGUQ01000039
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
7646
7557
-
Ser
TGA
[ENA]
¡û
Identical group No.66769 (1 seq.)
>C151053017
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1178448
1178538
+
Ser
TGA
[Ensembl]
¡û
Identical group No.66904 (1 seq.)
>W1711413184
MGVM01000162
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
3115
3027
-
Ser
TGA
[ENA]
¡û
Identical group No.66921 (2 seq.)
>W1711581931
MNUS01000091
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
72
159
+
Ser
TGA
[ENA]
¡û
>W1711581948
MNUS01000177
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5505
5592
+
Ser
TGA
[ENA]
¡û
Identical group No.67885 (1 seq.)
>W1711413385
MGVS01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
35624
35536
-
Ser
TGA
[ENA]
¡û
Identical group No.68934 (1 seq.)
>W1711583355
MNXB01000117
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
30136
30048
-
Ser
TGA
[ENA]
¡û
Identical group No.104852 (1 seq.)
>W1712038705
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
140702
140787
+
Ser
TGA
[ENA]
¡û
Identical group No.110445 (1 seq.)
>W1910727757
MGUS01000036
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
11145
11061
-
Ser
TGA
[ENA]
¡û
Identical group No.166250 (1 seq.)
>W1711413220
MGVN01000144
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
47400
47483
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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