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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TGT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458183 (1 seq.)
>W1711412833
MGVC01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
90018
90090
+
Thr
TGT
[ENA]
¡û
Identical group No.464785 (3 seq.)
>C08011151
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
212499
212424
-
Thr
TGT
-
¡û
>C181002108
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
208563
208491
-
Thr
TGT
-
¡û
>ENV000846
AP009510
Environmental sample from ENV division of INSDC
212499
212424
-
Thr
TGT
[ENA]
Identical group No.464831 (2 seq.)
>C08004677
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
452102
452030
-
Thr
TGT
[Ensembl]
¡û
>W09107471
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
462416
462344
-
Thr
TGT
[ENA]
¡û
Identical group No.481763 (5 seq.)
>W1711411925
MGTR01000072
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
4612
4684
+
Thr
TGT
[ENA]
¡û
>WENV180250933
OBEQ010326662
[OBEQ] groundwater metagenome; groundwater
2699
2624
-
Thr
TGT
[ENA]
¢þ
>W1910727586
MGUN01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
4657
4729
+
Thr
TGT
[ENA]
¡û
>W1910727844
MGUU01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
4653
4725
+
Thr
TGT
[ENA]
¡û
>W1910727903
MGUW01000020
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
4660
4732
+
Thr
TGT
[ENA]
¡û
Identical group No.505280 (2 seq.)
>W1910727672
MGUP01001008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2977
2905
-
Thr
TGT
[ENA]
¡û
>W1910727867
MGUV01000109
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
45263
45191
-
Thr
TGT
[ENA]
¡û
Identical group No.508668 (5 seq.)
>W1711412043
MGTU01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
37512
37584
+
Thr
TGT
[ENA]
¡û
>W1711412085
MGTV01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
55415
55488
+
Thr
TGT
[ENA]
¡û
>W1711412406
MGUE01000029
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
37503
37575
+
Thr
TGT
[ENA]
¡û
>W1711412565
MGUI01000052
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
84129
84057
-
Thr
TGT
[ENA]
¡û
>WENV183685783
ORMF010900928
[ORMF] groundwater metagenome; groundwater
550
622
+
Thr
TGT
[ENA]
¢þ
Identical group No.539214 (5 seq.)
>W1711412709
MGUY01000139
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
1430
1502
+
Thr
TGT
[ENA]
¡û
>W1711412730
MGUZ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
61567
61639
+
Thr
TGT
[ENA]
¡û
>W1711412917
MGVE01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
98972
99044
+
Thr
TGT
[ENA]
¡û
>W1711413090
MGVK01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
59648
59720
+
Thr
TGT
[ENA]
¡û
>W1711413139
MGVL01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
99003
99075
+
Thr
TGT
[ENA]
¡û
Identical group No.551789 (2 seq.)
>W1730028201
MGVD01000171
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
5145
5217
+
Thr
TGT
[ENA]
¡û
>W1730028214
MGVM01000069
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
6353
6281
-
Thr
TGT
[ENA]
¡û
Identical group No.552137 (1 seq.)
>W1711413209
MGVN01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
469
394
-
Thr
TGT
[ENA]
¡û
Identical group No.552139 (1 seq.)
>W1711413218
MGVN01000125
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
3451
3379
-
Thr
TGT
[ENA]
¡û
Identical group No.552142 (1 seq.)
>W1711413231
MGVN01000205
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2822
2750
-
Thr
TGT
[ENA]
¡û
Identical group No.552566 (5 seq.)
>W1710917250
LNVX01000134
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
542
617
+
Thr
TGT
[ENA]
¡û
>W1710917303
LNVX01000314
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
427
352
-
Thr
TGT
[ENA]
¡û
>W1710917304
LNVX01000324
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1256
1331
+
Thr
TGT
[ENA]
¡û
>WENV170715653
LQAB01009090
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2189
2264
+
Thr
TGT
[ENA]
¢þ
>WENV170715914
LQAB01020233
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1761
1686
-
Thr
TGT
[ENA]
¢þ
Identical group No.564111 (1 seq.)
>W1711412264
MGUA01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
94256
94184
-
Thr
TGT
[ENA]
¡û
Identical group No.574697 (2 seq.)
>W1711412127
MGTW01000059
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
178
106
-
Thr
TGT
[ENA]
¡û
>W1711412217
MGTZ01000004
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
36177
36105
-
Thr
TGT
[ENA]
¡û
Identical group No.574739 (2 seq.)
>W1711412965
MGVF01000135
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
25902
25830
-
Thr
TGT
[ENA]
¡û
>W1711413265
MGVO01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
33191
33119
-
Thr
TGT
[ENA]
¡û
Identical group No.592612 (1 seq.)
>W1910727704
MGUQ01000091
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
5730
5802
+
Thr
TGT
[ENA]
¡û
Identical group No.596062 (1 seq.)
>W1712038736
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
140660
140732
+
Thr
TGT
[ENA]
¡û
Identical group No.611623 (2 seq.)
>WENV170662773
JXWW01166516
[JXWW] soil metagenome; rice field; organic GM Plot
282
356
+
Thr
TGT
[ENA]
¢þ
>W1910727731
MGUR01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
8972
8900
-
Thr
TGT
[ENA]
¡û
Identical group No.612187 (1 seq.)
>C151053028
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1069881
1069809
-
Thr
TGT
[Ensembl]
¡û
Identical group No.656772 (1 seq.)
>W1711412475
MGUG01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
74662
74733
+
Thr
TGT
[ENA]
¡û
Identical group No.656783 (4 seq.)
>W1711411996
MGTT01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
215591
215520
-
Thr
TGT
[ENA]
¡û
>W1711412357
MGUC01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
23818
23889
+
Thr
TGT
[ENA]
¡û
>W1711412767
MGVA01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
1948
1877
-
Thr
TGT
[ENA]
¡û
>W1711413007
MGVG01000054
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
24864
24935
+
Thr
TGT
[ENA]
¡û
Identical group No.656805 (3 seq.)
>W1711413306
MGVQ01000036
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
22428
22499
+
Thr
TGT
[ENA]
¡û
>W1711413381
MGVS01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
21841
21770
-
Thr
TGT
[ENA]
¡û
>W1711413399
MGVT01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
2989
2918
-
Thr
TGT
[ENA]
¡û
Identical group No.673789 (3 seq.)
>W1711411955
MGTS01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
170176
170247
+
Thr
TGT
[ENA]
¡û
>W1711412306
MGUB01000042
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
6141
6070
-
Thr
TGT
[ENA]
¡û
>W1711412589
MGUJ01000096
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
5928
5857
-
Thr
TGT
[ENA]
¡û
Identical group No.686934 (2 seq.)
>W1711412825
MGVB01000148
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
13018
13089
+
Thr
TGT
[ENA]
¡û
>W1711413010
MGVH01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
29850
29921
+
Thr
TGT
[ENA]
¡û
Identical group No.687068 (1 seq.)
>W1711581882
MNUR01000055
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
10015
9944
-
Thr
TGT
[ENA]
¡û
Identical group No.752194 (1 seq.)
>W1711581955
MNUS01000247
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
2545
2616
+
Thr
TGT
[ENA]
¡û
Identical group No.760919 (1 seq.)
>W1910727809
MGUT01000077
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
15696
15767
+
Thr
TGT
[ENA]
¡û
Identical group No.761741 (1 seq.)
>W1711583336
MNXB01000044
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
11705
11634
-
Thr
TGT
[ENA]
¡û
Identical group No.779141 (1 seq.)
>W1910727629
MGUO01000310
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
848
777
-
Thr
TGT
[ENA]
¡û
Identical group No.781002 (5 seq.)
>W1711412163
MGTX01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
12092
12163
+
Thr
TGT
[ENA]
¡û
>W1711412513
MGUH01000093
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
12070
12141
+
Thr
TGT
[ENA]
¡û
>W1711412675
MGUL01000135
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
8552
8622
+
Thr
TGT
[ENA]
¡û
>W1711413338
MGVR01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
4418
4488
+
Thr
TGT
[ENA]
¡û
>WENV183680567
ORMF010198360
[ORMF] groundwater metagenome; groundwater
1418
1488
+
Thr
TGT
[ENA]
¢þ
Identical group No.794462 (1 seq.)
>W1711412212
MGTY01000112
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
6570
6500
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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