This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CCA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237014 (2 seq.)
>W1910228368
FNOF01000003
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
254916
254991
+
Trp
CCA
[ENA]
¡û
>W1610014107
AOLQ01000004
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
254832
254907
+
Trp
CCA
[ENA]
¡û
Identical group No.252478 (1 seq.)
>W1911709840
QPLV01000003
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
238720
238646
-
Trp
CCA
[ENA]
¡û
Identical group No.525717 (1 seq.)
>W1610623930
LHYJ01000014
Euryarchaeota
candidate division MSBL1 archaeon SCGC-AAA382N08 MSBL1 archaeon SCGC-AAA382N08 [LHYJ]
469
396
-
Trp
CCA
[ENA]
¡û
Identical group No.799152 (1 seq.)
>W1910226648
FMXB01000008
Euryarchaeota
Methanobrevibacter millerae DSM 16643 [FMXB]
49969
49899
-
Trp
CCA
[ENA]
¡û
Identical group No.799159 (1 seq.)
>W1910229718
FOCX01000031
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
20237
20166
-
Trp
CCA
[ENA]
¡û
Identical group No.818552 (1 seq.)
>W1610014347
AOLX01000027
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
221419
221349
-
Trp
CCA
[ENA]
¡û
Identical group No.823991 (2 seq.)
>W1910230513
FOTC01000006
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
163703
163632
-
Trp
CCA
[ENA]
¡û
>W1610005914
ALJD01000014
Euryarchaeota
Halogranum salarium B-1 [ALJD]
41511
41582
+
Trp
CCA
[ENA]
¡û
Identical group No.826292 (1 seq.)
>W1610945989
LUYG01000260
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
3059
3131
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK