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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.507205 (20 seq.)
>W131228126
AUFS01000001
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
164123
164198
+
Gly
TCC
[ENA]
¡û
>W131228139
AUFS01000001
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
90676
90601
-
Gly
TCC
[ENA]
¡û
>W131228160
AUFS01000002
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
22946
23021
+
Gly
TCC
[ENA]
¡û
>W131228180
AUFS01000003
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
793278
793203
-
Gly
TCC
[ENA]
¡û
>W131228182
AUFS01000003
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
793078
793003
-
Gly
TCC
[ENA]
¡û
>PL171000416
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245233
245308
+
Gly
TCC
[ENA]
¡û
>PL171000422
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245766
245841
+
Gly
TCC
[ENA]
¡û
>PL171000435
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
920020
919945
-
Gly
TCC
[ENA]
¡û
>WENV181210636
OFBH01016944
[OFBH] metagenome; hydrothermal vent
391
466
+
Gly
TCC
[ENA]
¢þ
>WENV170012561
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1033
1108
+
Gly
TCC
[ENA]
¢þ
>WENV170692963
LGOV01053315
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
338
263
-
Gly
TCC
[ENA]
¢þ
>W1810780083
QQOU01000004
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
530
455
-
Gly
TCC
[ENA]
¡û
>W1810780090
QQOU01000011
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
81269
81194
-
Gly
TCC
[ENA]
¡û
>W1810780119
QQOU01000037
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
5959
6034
+
Gly
TCC
[ENA]
¡û
>W1810780130
QQOU01000065
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
2021
1946
-
Gly
TCC
[ENA]
¡û
>W1810870085
QUAJ01000004
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
530
455
-
Gly
TCC
[ENA]
¡û
>W1810870092
QUAJ01000011
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
81269
81194
-
Gly
TCC
[ENA]
¡û
>W1810870121
QUAJ01000037
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
5959
6034
+
Gly
TCC
[ENA]
¡û
>W1810870132
QUAJ01000065
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
2021
1946
-
Gly
TCC
[ENA]
¡û
>C11111540
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1266669
1266594
-
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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