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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gammaproteobacteria
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235962 (4 seq.)
>W1710871681
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
82849
82927
+
Arg
TCG
[ENA]
¡û
>WENV181191670
OEPS010159351
[OEPS] soil metagenome; soil
73
151
+
Arg
TCG
[ENA]
¢þ
>PL191001119
CP032678
Gammaproteobacteria
Pseudomonas sp. Leaf58 plasmid:pBASL58 (CP032678)
836454
836376
-
Arg
TCG
[ENA]
¡û
>W1610734027
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
82849
82927
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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