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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656205 (16 seq.)
>W1710892844
LNEE01000017
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
4340
4414
+
Val
CAC
[ENA]
¡û
>W1711767959
MVBK01000010
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
70664
70590
-
Val
CAC
[ENA]
¡û
>C171062139
CP017415
Gammaproteobacteria
Acidihalobacter yilgarnensis F5 [CP017415]
1665475
1665401
-
Val
CAC
-
¡û
>W131175487
ARJH01000055
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
5804
5730
-
Val
CAC
[ENA]
¡û
>W131225564
AUDR01000014
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
313734
313660
-
Val
CAC
[ENA]
¡û
>WENV170708894
LNFM01000020
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3921
3995
+
Val
CAC
[ENA]
¢þ
>W09113248
ABYM01000008
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
62352
62426
+
Val
CAC
[ENA]
¡û
>W09113249
ABYM01000008
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
63333
63407
+
Val
CAC
[ENA]
¡û
>C09110624
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
1418176
1418102
-
Val
CAC
[Ensembl]
¡û
>W1510741362
CYHH01000002
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
253398
253324
-
Val
CAC
[ENA]
¡û
>W11177745
AGBG01000032
Gammaproteobacteria
Ectothiorhodospira sp. PHS-1 [AGBG]
3258
3184
-
Val
CAC
[ENA]
¡û
>W1610632363
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
253398
253324
-
Val
CAC
[ENA]
¡û
>W1610753110
LNEE01000017
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
4340
4414
+
Val
CAC
[ENA]
¡û
>W1710543512
FOAA01000006
Gammaproteobacteria
Ectothiorhodospira marina [FOAA]
16331
16257
-
Val
CAC
[ENA]
¡û
>W1710550793
FOFO01000019
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
2064
2138
+
Val
CAC
[ENA]
¡û
>W1710766749
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
253398
253324
-
Val
CAC
[ENA]
¡û
Identical group No.656812 (15 seq.)
>W1711387342
MEGN01000009
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
82742
82668
-
Val
CAC
[ENA]
¡û
>W1711387376
MEGO01000074
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
1615
1689
+
Val
CAC
[ENA]
¡û
>W1711414530
MGZO01000131
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
1604
1530
-
Val
CAC
[ENA]
¡û
>W1711504043
MKUE01000095
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
91611
91537
-
Val
CAC
[ENA]
¡û
>W1711504069
MKUF01000006
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
72223
72297
+
Val
CAC
[ENA]
¡û
>W1711506512
MKWL01000023
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
59670
59744
+
Val
CAC
[ENA]
¡û
>W1711506535
MKWM01000020
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
1765
1839
+
Val
CAC
[ENA]
¡û
>W131160281
AQWL01000008
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
108160
108086
-
Val
CAC
[ENA]
¡û
>W131168085
ARDU01000008
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
54537
54611
+
Val
CAC
[ENA]
¡û
>C025406
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1819113
1819039
-
Val
CAC
[Ensembl]
¡û
>WENV180311031
OBJT01092003
[OBJT] soil metagenome; soil
315
241
-
Val
CAC
[ENA]
¢þ
>WENV181167323
OEIU01019952
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1067
993
-
Val
CAC
[ENA]
¢þ
>WENV181191082
OEPS010022080
[OEPS] soil metagenome; soil
240
314
+
Val
CAC
[ENA]
¢þ
>WENV170670537
LAHT01035954
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
720
646
-
Val
CAC
[ENA]
¢þ
>W09101561
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
83093
83167
+
Val
CAC
[ENA]
¡û
Identical group No.726103 (1 seq.)
>C191003431
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1216801
1216875
+
Val
CAC
-
¡û
Identical group No.745383 (1 seq.)
>W1711583430
MNXE01000047
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
35062
34988
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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