tRNA genes clustered and arranged according to each identical group

Hydrogenophilia

Anticodon = CGC

HIT: 4 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.454540 (124 seq.)
>W1710808940 LKDZ01000037 Betaproteobacteria Variovorax boronicumulans [LKDZ] 143188 143113 - Ala CGC [ENA] ¡û
>W1710821629 LKTU01000017 Betaproteobacteria Variovorax paradoxus [LKTU] 28669 28594 - Ala CGC [ENA] ¡û
>W1710821671 LKTV01000003 Betaproteobacteria Variovorax paradoxus [LKTV] 28668 28593 - Ala CGC [ENA] ¡û
>W1710821739 LKTW01000081 Betaproteobacteria Variovorax paradoxus [LKTW] 13393 13468 + Ala CGC [ENA] ¡û
>W1710821774 LKTX01000012 Betaproteobacteria Variovorax paradoxus [LKTX] 94328 94403 + Ala CGC [ENA] ¡û
>W1710821824 LKTY01000003 Betaproteobacteria Variovorax paradoxus [LKTY] 28669 28594 - Ala CGC [ENA] ¡û
>W1710821875 LKTZ01000001 Betaproteobacteria Variovorax paradoxus [LKTZ] 4921 4846 - Ala CGC [ENA] ¡û
>W1710860737 LMDC01000027 Betaproteobacteria Pelomonas sp. Root1217 [LMDC] 87604 87529 - Ala CGC [ENA] ¡û
>W1710861114 LMDK01000003 Betaproteobacteria Pelomonas sp. Root1237 [LMDK] 108848 108773 - Ala CGC [ENA] ¡û
>W1710861693 LMDU01000016 Betaproteobacteria Pelomonas sp. Root405 [LMDU] 82670 82745 + Ala CGC [ENA] ¡û
>W1710862461 LMEK01000001 Betaproteobacteria Variovorax sp. Root434 [LMEK] 511835 511760 - Ala CGC [ENA] ¡û
>W1710863074 LMEV01000012 Betaproteobacteria Variovorax sp. Root473 [LMEV] 112828 112753 - Ala CGC [ENA] ¡û
>W1710864095 LMFP01000028 Betaproteobacteria Pelomonas sp. Root1444 [LMFP] 863813 863888 + Ala CGC [ENA] ¡û
>W1710866088 LMHE01000016 Betaproteobacteria Pelomonas sp. Root662 [LMHE] 296028 296103 + Ala CGC [ENA] ¡û
>W1710873493 LMMV01000004 Betaproteobacteria Pseudorhodoferax sp. Leaf267 [LMMV] 147018 146943 - Ala CGC [ENA] ¡û
>W1711074200 LSJH01000966 Betaproteobacteria Xylophilus ampelinus [LSJH] 11786 11711 - Ala CGC [ENA] ¡û
>W1711123822 LUJJ01000015 Betaproteobacteria Variovorax boronicumulans [LUJJ] 143207 143132 - Ala CGC [ENA] ¡û
>W1711143350 LVHG01000029 Betaproteobacteria Variovorax paradoxus [LVHG] 153399 153474 + Ala CGC [ENA] ¡û
>W1711250073 LYMK01000004 Betaproteobacteria Variovorax sp. JS1663 [LYMK] 161429 161504 + Ala CGC [ENA] ¡û
>W1711386828 MEFV01000003 Betaproteobacteria Comamonas sp. SCN 67-35 [MEFV] 51656 51731 + Ala CGC [ENA] ¡û
>W1711414520 MGZO01000104 Hydrogenophilia Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO] 4351 4426 + Ala CGC [ENA] ¡û
>W1711423796 MIDJ01000082 Betaproteobacteria Thiobacillus sp. GWE1_62_9 [MIDJ] 15942 15867 - Ala CGC [ENA] ¡û
>W1711502135 MKSJ01000210 Betaproteobacteria Burkholderiales bacterium 66-5 [MKSJ] 4455 4530 + Ala CGC [ENA] ¡û
>W1711503037 MKTG01000021 Betaproteobacteria Burkholderiales bacterium 68-10 [MKTG] 6891 6816 - Ala CGC [ENA] ¡û
>W1711504153 MKUH01000008 Betaproteobacteria Candidatus Accumulibacter sp. 66-26 [MKUH] 124199 124274 + Ala CGC [ENA] ¡û
>W1711504574 MKUR01000042 Betaproteobacteria Burkholderiales bacterium 66-26 [MKUR] 215492 215417 - Ala CGC [ENA] ¡û
>W1712105738 NISI01000008 Betaproteobacteria Roseateles puraquae [NISI] 575 500 - Ala CGC [ENA] ¡û
>W131066632 ANOY01000499 Betaproteobacteria Pseudacidovorax intermedius NH-1 [ANOY] 10281 10356 + Ala CGC [ENA] ¡û
>W131180344 ARNA01000045 Betaproteobacteria Variovorax paradoxus 110B [ARNA] 91950 91875 - Ala CGC [ENA] ¡û
>C007464 CP000089 Betaproteobacteria Dechloromonas aromatica [CP000089] 496667 496742 + Ala CGC [Ensembl] ¡û
>WENV180016772 FSVW01001625 [FSVW] metagenome; soil 1292 1367 + Ala CGC [ENA] ¢þ
>WENV180016834 FSVW01003985 [FSVW] metagenome; soil 2746 2821 + Ala CGC [ENA] ¢þ
>WENV180096279 MTBK01120835 [MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge 213 288 + Ala CGC [ENA] ¢þ
>WENV180256879 OBEQ010860965 [OBEQ] groundwater metagenome; groundwater 5603 5528 - Ala CGC [ENA] ¢þ
>WENV180260658 OBEQ011218590 [OBEQ] groundwater metagenome; groundwater 1598 1673 + Ala CGC [ENA] ¢þ
>WENV180311613 OBJT01410504 [OBJT] soil metagenome; soil 109 34 - Ala CGC [ENA] ¢þ
>WENV180558204 OCJY01011949 [OCJY] human gut metagenome; human gut 757 682 - Ala CGC [ENA] ¢þ
>WENV180731559 ODGW01002266 [ODGW] human metagenome; G_DNA_Supragingival plaque 287 212 - Ala CGC [ENA] ¢þ
>WENV180751765 ODHS01149676 [ODHS] human metagenome; G_DNA_Supragingival plaque 95 20 - Ala CGC [ENA] ¢þ
>WENV180814905 ODJO01087868 [ODJO] human metagenome; G_DNA_Supragingival plaque 237 162 - Ala CGC [ENA] ¢þ
>WENV180833589 ODKC01118841 [ODKC] human metagenome; G_DNA_Supragingival plaque 84 9 - Ala CGC [ENA] ¢þ
>WENV180835705 ODKE01009254 [ODKE] human metagenome; G_DNA_Supragingival plaque 109 34 - Ala CGC [ENA] ¢þ
>WENV180938483 ODTX01002332 [ODTX] human metagenome; G_DNA_Supragingival plaque 6986 7061 + Ala CGC [ENA] ¢þ
>WENV180981383 ODVE01019658 [ODVE] human metagenome; G_DNA_Supragingival plaque 230 155 - Ala CGC [ENA] ¢þ
>WENV181049435 ODYD01000197 [ODYD] human metagenome; G_DNA_Supragingival plaque 394 319 - Ala CGC [ENA] ¢þ
>WENV181070475 OEAE01002070 [OEAE] human metagenome; G_DNA_Supragingival plaque 7290 7365 + Ala CGC [ENA] ¢þ
>WENV181166892 OEIU01003937 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 4716 4791 + Ala CGC [ENA] ¢þ
>WENV181169685 OEIV010007025 [OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 2721 2796 + Ala CGC [ENA] ¢þ
>WENV181179891 OEJT01025824 [OEJT] human metagenome; G_DNA_Supragingival plaque 193 118 - Ala CGC [ENA] ¢þ
>WENV181190796 OEPS010003112 [OEPS] soil metagenome; soil 2347 2272 - Ala CGC [ENA] ¢þ
>WENV181228036 OFDN01120002 [OFDN] hot springs metagenome; Water 470 545 + Ala CGC [ENA] ¢þ
>WENV181308143 OFIS01000324 [OFIS] sludge metagenome; sludge 8756 8681 - Ala CGC [ENA] ¢þ
>WENV181311228 OFJB01000336 [OFJB] sludge metagenome; sludge 4374 4299 - Ala CGC [ENA] ¢þ
>WENV181311343 OFJB01000940 [OFJB] sludge metagenome; sludge 3545 3620 + Ala CGC [ENA] ¢þ
>WENV181311394 OFJB01001549 [OFJB] sludge metagenome; sludge 3652 3727 + Ala CGC [ENA] ¢þ
>WENV181401349 OFTX01000025 [OFTX] sludge metagenome; sludge 65279 65204 - Ala CGC [ENA] ¢þ
>WENV181401495 OFTX01000459 [OFTX] sludge metagenome; sludge 3489 3414 - Ala CGC [ENA] ¢þ
>WENV181401593 OFTX01001302 [OFTX] sludge metagenome; sludge 9310 9235 - Ala CGC [ENA] ¢þ
>WENV181402522 OFTY01003239 [OFTY] sludge metagenome; sludge 1857 1932 + Ala CGC [ENA] ¢þ
>W141169044 AXVM01000002 Betaproteobacteria Comamonas badia DSM 17552 [AXVM] 136266 136341 + Ala CGC [ENA] ¡û
>W141170901 AXZB01000001 Betaproteobacteria Burkholderiales bacterium JGI 0001003-A5 [AXZB] 63713 63638 - Ala CGC [ENA] ¡û
>W141194254 AYSW01000085 Betaproteobacteria Robbsia andropogonis Ba3549 [AYSW] 86618 86543 - Ala CGC [ENA] ¡û
>WENV183666090 ORJL010519689 [ORJL] groundwater metagenome; groundwater 2054 2129 + Ala CGC [ENA] ¢þ
>WENV183696803 OUME01000026 [OUME] metagenome; soil 68096 68171 + Ala CGC [ENA] ¢þ
>WENV183697136 OUNJ010014069 [OUNJ] metagenome; soil 1628 1553 - Ala CGC [ENA] ¢þ
>WENV183735337 PJUA01013292 [PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment 60 135 + Ala CGC [ENA] ¢þ
>WENV183735597 PJUB01000115 [PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment 25934 25859 - Ala CGC [ENA] ¢þ
>WENV183736258 PJUC01000304 [PJUC] soil metagenome; Soil enriched on filter paper 11692 11617 - Ala CGC [ENA] ¢þ
>WENV183741432 PJUG01000011 [PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment 88987 89062 + Ala CGC [ENA] ¢þ
>WENV183741962 PJUH01000020 [PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment 109108 109183 + Ala CGC [ENA] ¢þ
>WENV170011549 APMI01073578 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 2132 2207 + Ala CGC [ENA] ¢þ
>WENV170646105 JQGF01076886 [JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each 74 149 + Ala CGC [ENA] ¢þ
>WENV170710216 LNFM01001317 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 12638 12563 - Ala CGC [ENA] ¢þ
>C181078497 CP023284 Betaproteobacteria Variovorax boronicumulans J1 [CP023284] 2096991 2096916 - Ala CGC - ¡û
>C181158446 CP027666 Betaproteobacteria Ottowia oryzae KADR8-3 [CP027666] 1958489 1958414 - Ala CGC - ¡û
>C181159375 CP027773 Betaproteobacteria Variovorax sp. PMC12 [CP027773, CP027774] 2331795 2331870 + Ala CGC - ¡û
>W09100898 AADF01000008 Betaproteobacteria Dechloromonas aromatica RCB [AADF] 122299 122374 + Ala CGC [ENA] ¡û
>W141816794 JQKD01000012 Betaproteobacteria Xenophilus azovorans DSM 13620 [JQKD] 79621 79546 - Ala CGC [ENA] ¡û
>W1910792809 MRCN01000001 Betaproteobacteria Variovorax boronicumulans ACN3 [MRCN] 511805 511730 - Ala CGC [ENA] ¡û
>W1911494347 OBKE01005258 Unclassified bacterium [OBKE] 378 303 - Ala CGC [ENA] ¡û
>W1911502795 OEQA01000007 Betaproteobacteria Ottowia massiliensis Marseille-P4747 [OEQA] 268898 268823 - Ala CGC [ENA] ¡û
>W1911709200 QPIB01000001 Betaproteobacteria Xenophilus sp. E41 [QPIB] 481505 481580 + Ala CGC [ENA] ¡û
>W1911740724 QUSW01000002 Betaproteobacteria Albitalea terrae S-16 [QUSW] 293327 293402 + Ala CGC [ENA] ¡û
>W1911766092 QXDH01000003 Betaproteobacteria Pelomonas sp. BT06 [QXDH] 858098 858023 - Ala CGC [ENA] ¡û
>W1911775325 QXMN01000026 Betaproteobacteria Acidovorax cavernicola 1011MAR4D40.2 [QXMN] 68786 68861 + Ala CGC [ENA] ¡û
>W1810759447 QPJK01000010 Betaproteobacteria Pseudorhodoferax soli DSM 21634 [QPJK] 76535 76460 - Ala CGC [ENA] ¡û
>W1810763098 QQAV01000004 Betaproteobacteria Pseudacidovorax intermedius DSM 21352 [QQAV] 146535 146610 + Ala CGC [ENA] ¡û
>C151090588 CP012073 Betaproteobacteria Ottowia sp. oral taxon 894 W10237 [CP012073] 320994 321069 + Ala CGC - ¡û
>W1510766084 JANU01000023 Betaproteobacteria Caenimonas sp. SL110 [JANU] 130879 130804 - Ala CGC [ENA] ¡û
>W1511352956 JROV01000226 Betaproteobacteria Variovorax paradoxus ZNC0006 [JROV] 3519 3594 + Ala CGC [ENA] ¡û
>W1511577549 LAQU01000003 Betaproteobacteria Robbsia andropogonis ICMP2807 [LAQU] 242075 242000 - Ala CGC [ENA] ¡û
>W121084961 AKIW01000027 Betaproteobacteria Variovorax sp. CF313 [AKIW] 36923 36998 + Ala CGC [ENA] ¡û
>W1610072133 BCUS01000001 Betaproteobacteria Variovorax boronicumulans NBRC 103145 [BCUS] 147805 147880 + Ala CGC [ENA] ¡û
>W1610072236 BCUU01000002 Betaproteobacteria Variovorax soli NBRC 106424 [BCUU] 102039 101964 - Ala CGC [ENA] ¡û
>W1610591931 LDSL01000038 Betaproteobacteria Pseudacidovorax intermedius [LDSL] 85102 85027 - Ala CGC [ENA] ¡û
>W1610685591 LKTU01000017 Betaproteobacteria Variovorax paradoxus [LKTU] 28669 28594 - Ala CGC [ENA] ¡û
>W1610685633 LKTV01000003 Betaproteobacteria Variovorax paradoxus [LKTV] 28668 28593 - Ala CGC [ENA] ¡û
>W1610685701 LKTW01000081 Betaproteobacteria Variovorax paradoxus [LKTW] 13393 13468 + Ala CGC [ENA] ¡û
>W1610685736 LKTX01000012 Betaproteobacteria Variovorax paradoxus [LKTX] 94328 94403 + Ala CGC [ENA] ¡û
>W1610685786 LKTY01000003 Betaproteobacteria Variovorax paradoxus [LKTY] 28669 28594 - Ala CGC [ENA] ¡û
>W1610685837 LKTZ01000001 Betaproteobacteria Variovorax paradoxus [LKTZ] 4921 4846 - Ala CGC [ENA] ¡û
>W1610723083 LMDC01000027 Betaproteobacteria Pelomonas sp. Root1217 [LMDC] 87604 87529 - Ala CGC [ENA] ¡û
>W1610723460 LMDK01000003 Betaproteobacteria Pelomonas sp. Root1237 [LMDK] 108848 108773 - Ala CGC [ENA] ¡û
>W1610724039 LMDU01000016 Betaproteobacteria Pelomonas sp. Root405 [LMDU] 82670 82745 + Ala CGC [ENA] ¡û
>W1610724807 LMEK01000001 Betaproteobacteria Variovorax sp. Root434 [LMEK] 511835 511760 - Ala CGC [ENA] ¡û
>W1610725420 LMEV01000012 Betaproteobacteria Variovorax sp. Root473 [LMEV] 112828 112753 - Ala CGC [ENA] ¡û
>W1610726441 LMFP01000028 Betaproteobacteria Pelomonas sp. Root1444 [LMFP] 863813 863888 + Ala CGC [ENA] ¡û
>W1610728434 LMHE01000016 Betaproteobacteria Pelomonas sp. Root662 [LMHE] 296028 296103 + Ala CGC [ENA] ¡û
>W1610735839 LMMV01000004 Betaproteobacteria Pseudorhodoferax sp. Leaf267 [LMMV] 147018 146943 - Ala CGC [ENA] ¡û
>W1610913505 LSJH01000966 Betaproteobacteria Xylophilus ampelinus [LSJH] 11786 11711 - Ala CGC [ENA] ¡û
>W1610954358 LVHG01000029 Betaproteobacteria Variovorax paradoxus [LVHG] 153399 153474 + Ala CGC [ENA] ¡û
>W1710069335 BCUS01000001 Betaproteobacteria Variovorax boronicumulans NBRC 103145 [BCUS] 147805 147880 + Ala CGC [ENA] ¡û
>W1710069438 BCUU01000002 Betaproteobacteria Variovorax soli NBRC 106424 [BCUU] 102039 101964 - Ala CGC [ENA] ¡û
>W1710506175 FMUJ01000001 Betaproteobacteria Variovorax sp. EL159 [FMUJ] 211573 211498 - Ala CGC [ENA] ¡û
>W1710512942 FMZU01000008 Betaproteobacteria Variovorax sp. CF079 [FMZU] 76701 76776 + Ala CGC [ENA] ¡û
>W1710534025 FNRO01000002 Betaproteobacteria Variovorax sp. YR216 [FNRO] 240067 239992 - Ala CGC [ENA] ¡û
>W1710538176 FNUI01000016 Betaproteobacteria Variovorax sp. NFACC28 [FNUI] 121728 121653 - Ala CGC [ENA] ¡û
>W1710539586 FNVM01000017 Betaproteobacteria Variovorax sp. NFACC29 [FNVM] 99749 99674 - Ala CGC [ENA] ¡û
>W1710545289 FOBJ01000005 Betaproteobacteria Variovorax sp. YR750 [FOBJ] 120962 120887 - Ala CGC [ENA] ¡û
>W1710557171 FOKS01000017 Betaproteobacteria Variovorax sp. NFACC26 [FOKS] 99749 99674 - Ala CGC [ENA] ¡û
>W1710562283 FOOV01000019 Betaproteobacteria Variovorax sp. NFACC27 [FOOV] 99749 99674 - Ala CGC [ENA] ¡û
>W1710569248 FOUG01000003 Betaproteobacteria Variovorax sp. OV329 [FOUG] 381753 381678 - Ala CGC [ENA] ¡û
>W1710597077 FTMY01000001 Betaproteobacteria Pseudacidovorax sp. RU35E [FTMY] 211618 211543 - Ala CGC [ENA] ¡û
>W1710711211 LDSL01000038 Betaproteobacteria Pseudacidovorax intermedius [LDSL] 85102 85027 - Ala CGC [ENA] ¡û
Identical group No.565162 (7 seq.)
>W131225565 AUDR01000014 Hydrogenophilia Tepidiphilus margaritifer DSM 15129 [AUDR] 313630 313555 - Ala CGC [ENA] ¡û
>W1711391795 MEMB01000002 Alphaproteobacteria Alphaproteobacteria bacterium GWF2_58_20 [MEMB] 641435 641360 - Ala CGC [ENA] ¡û
>WENV170554029 CXWK01043670 [CXWK] wastewater metagenome; activated sludge 7781 7856 + Ala CGC [ENA] ¢þ
>WENV170574885 FLYN01014803 [FLYN] hot springs metagenome; Sediment 197 122 - Ala CGC [ENA] ¢þ
>W1510741363 CYHH01000002 Hydrogenophilia Tepidiphilus thermophilus JCM 19170 [CYHH] 253291 253216 - Ala CGC [ENA] ¡û
>W1610632364 LIPU01000002 Hydrogenophilia Tepidiphilus thermophilus [LIPU] 253291 253216 - Ala CGC [ENA] ¡û
>W1710766750 LIPU01000002 Hydrogenophilia Tepidiphilus thermophilus [LIPU] 253291 253216 - Ala CGC [ENA] ¡û
Identical group No.572232 (1 seq.)
>C191003432 AP018558 Hydrogenophilia Hydrogenophilus thermoluteolus TH-1 [AP018558] 1216889 1216964 + Ala CGC - ¡û
Identical group No.586108 (2 seq.)
>W1711506553 MKWM01000073 Betaproteobacteria Thiobacillus sp. 63-78 [MKWM] 181738 181813 + Ala CGC [ENA] ¡û
>W1711583427 MNXE01000043 Hydrogenophilia Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE] 14860 14785 - Ala CGC [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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