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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454540 (124 seq.)
>W1710808940
LKDZ01000037
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
143188
143113
-
Ala
CGC
[ENA]
¡û
>W1710821629
LKTU01000017
Betaproteobacteria
Variovorax paradoxus [LKTU]
28669
28594
-
Ala
CGC
[ENA]
¡û
>W1710821671
LKTV01000003
Betaproteobacteria
Variovorax paradoxus [LKTV]
28668
28593
-
Ala
CGC
[ENA]
¡û
>W1710821739
LKTW01000081
Betaproteobacteria
Variovorax paradoxus [LKTW]
13393
13468
+
Ala
CGC
[ENA]
¡û
>W1710821774
LKTX01000012
Betaproteobacteria
Variovorax paradoxus [LKTX]
94328
94403
+
Ala
CGC
[ENA]
¡û
>W1710821824
LKTY01000003
Betaproteobacteria
Variovorax paradoxus [LKTY]
28669
28594
-
Ala
CGC
[ENA]
¡û
>W1710821875
LKTZ01000001
Betaproteobacteria
Variovorax paradoxus [LKTZ]
4921
4846
-
Ala
CGC
[ENA]
¡û
>W1710860737
LMDC01000027
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
87604
87529
-
Ala
CGC
[ENA]
¡û
>W1710861114
LMDK01000003
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
108848
108773
-
Ala
CGC
[ENA]
¡û
>W1710861693
LMDU01000016
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
82670
82745
+
Ala
CGC
[ENA]
¡û
>W1710862461
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
511835
511760
-
Ala
CGC
[ENA]
¡û
>W1710863074
LMEV01000012
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
112828
112753
-
Ala
CGC
[ENA]
¡û
>W1710864095
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
863813
863888
+
Ala
CGC
[ENA]
¡û
>W1710866088
LMHE01000016
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
296028
296103
+
Ala
CGC
[ENA]
¡û
>W1710873493
LMMV01000004
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
147018
146943
-
Ala
CGC
[ENA]
¡û
>W1711074200
LSJH01000966
Betaproteobacteria
Xylophilus ampelinus [LSJH]
11786
11711
-
Ala
CGC
[ENA]
¡û
>W1711123822
LUJJ01000015
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
143207
143132
-
Ala
CGC
[ENA]
¡û
>W1711143350
LVHG01000029
Betaproteobacteria
Variovorax paradoxus [LVHG]
153399
153474
+
Ala
CGC
[ENA]
¡û
>W1711250073
LYMK01000004
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
161429
161504
+
Ala
CGC
[ENA]
¡û
>W1711386828
MEFV01000003
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
51656
51731
+
Ala
CGC
[ENA]
¡û
>W1711414520
MGZO01000104
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
4351
4426
+
Ala
CGC
[ENA]
¡û
>W1711423796
MIDJ01000082
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
15942
15867
-
Ala
CGC
[ENA]
¡û
>W1711502135
MKSJ01000210
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
4455
4530
+
Ala
CGC
[ENA]
¡û
>W1711503037
MKTG01000021
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
6891
6816
-
Ala
CGC
[ENA]
¡û
>W1711504153
MKUH01000008
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
124199
124274
+
Ala
CGC
[ENA]
¡û
>W1711504574
MKUR01000042
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
215492
215417
-
Ala
CGC
[ENA]
¡û
>W1712105738
NISI01000008
Betaproteobacteria
Roseateles puraquae [NISI]
575
500
-
Ala
CGC
[ENA]
¡û
>W131066632
ANOY01000499
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
10281
10356
+
Ala
CGC
[ENA]
¡û
>W131180344
ARNA01000045
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
91950
91875
-
Ala
CGC
[ENA]
¡û
>C007464
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
496667
496742
+
Ala
CGC
[Ensembl]
¡û
>WENV180016772
FSVW01001625
[FSVW] metagenome; soil
1292
1367
+
Ala
CGC
[ENA]
¢þ
>WENV180016834
FSVW01003985
[FSVW] metagenome; soil
2746
2821
+
Ala
CGC
[ENA]
¢þ
>WENV180096279
MTBK01120835
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
213
288
+
Ala
CGC
[ENA]
¢þ
>WENV180256879
OBEQ010860965
[OBEQ] groundwater metagenome; groundwater
5603
5528
-
Ala
CGC
[ENA]
¢þ
>WENV180260658
OBEQ011218590
[OBEQ] groundwater metagenome; groundwater
1598
1673
+
Ala
CGC
[ENA]
¢þ
>WENV180311613
OBJT01410504
[OBJT] soil metagenome; soil
109
34
-
Ala
CGC
[ENA]
¢þ
>WENV180558204
OCJY01011949
[OCJY] human gut metagenome; human gut
757
682
-
Ala
CGC
[ENA]
¢þ
>WENV180731559
ODGW01002266
[ODGW] human metagenome; G_DNA_Supragingival plaque
287
212
-
Ala
CGC
[ENA]
¢þ
>WENV180751765
ODHS01149676
[ODHS] human metagenome; G_DNA_Supragingival plaque
95
20
-
Ala
CGC
[ENA]
¢þ
>WENV180814905
ODJO01087868
[ODJO] human metagenome; G_DNA_Supragingival plaque
237
162
-
Ala
CGC
[ENA]
¢þ
>WENV180833589
ODKC01118841
[ODKC] human metagenome; G_DNA_Supragingival plaque
84
9
-
Ala
CGC
[ENA]
¢þ
>WENV180835705
ODKE01009254
[ODKE] human metagenome; G_DNA_Supragingival plaque
109
34
-
Ala
CGC
[ENA]
¢þ
>WENV180938483
ODTX01002332
[ODTX] human metagenome; G_DNA_Supragingival plaque
6986
7061
+
Ala
CGC
[ENA]
¢þ
>WENV180981383
ODVE01019658
[ODVE] human metagenome; G_DNA_Supragingival plaque
230
155
-
Ala
CGC
[ENA]
¢þ
>WENV181049435
ODYD01000197
[ODYD] human metagenome; G_DNA_Supragingival plaque
394
319
-
Ala
CGC
[ENA]
¢þ
>WENV181070475
OEAE01002070
[OEAE] human metagenome; G_DNA_Supragingival plaque
7290
7365
+
Ala
CGC
[ENA]
¢þ
>WENV181166892
OEIU01003937
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4716
4791
+
Ala
CGC
[ENA]
¢þ
>WENV181169685
OEIV010007025
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2721
2796
+
Ala
CGC
[ENA]
¢þ
>WENV181179891
OEJT01025824
[OEJT] human metagenome; G_DNA_Supragingival plaque
193
118
-
Ala
CGC
[ENA]
¢þ
>WENV181190796
OEPS010003112
[OEPS] soil metagenome; soil
2347
2272
-
Ala
CGC
[ENA]
¢þ
>WENV181228036
OFDN01120002
[OFDN] hot springs metagenome; Water
470
545
+
Ala
CGC
[ENA]
¢þ
>WENV181308143
OFIS01000324
[OFIS] sludge metagenome; sludge
8756
8681
-
Ala
CGC
[ENA]
¢þ
>WENV181311228
OFJB01000336
[OFJB] sludge metagenome; sludge
4374
4299
-
Ala
CGC
[ENA]
¢þ
>WENV181311343
OFJB01000940
[OFJB] sludge metagenome; sludge
3545
3620
+
Ala
CGC
[ENA]
¢þ
>WENV181311394
OFJB01001549
[OFJB] sludge metagenome; sludge
3652
3727
+
Ala
CGC
[ENA]
¢þ
>WENV181401349
OFTX01000025
[OFTX] sludge metagenome; sludge
65279
65204
-
Ala
CGC
[ENA]
¢þ
>WENV181401495
OFTX01000459
[OFTX] sludge metagenome; sludge
3489
3414
-
Ala
CGC
[ENA]
¢þ
>WENV181401593
OFTX01001302
[OFTX] sludge metagenome; sludge
9310
9235
-
Ala
CGC
[ENA]
¢þ
>WENV181402522
OFTY01003239
[OFTY] sludge metagenome; sludge
1857
1932
+
Ala
CGC
[ENA]
¢þ
>W141169044
AXVM01000002
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
136266
136341
+
Ala
CGC
[ENA]
¡û
>W141170901
AXZB01000001
Betaproteobacteria
Burkholderiales bacterium JGI 0001003-A5 [AXZB]
63713
63638
-
Ala
CGC
[ENA]
¡û
>W141194254
AYSW01000085
Betaproteobacteria
Robbsia andropogonis Ba3549 [AYSW]
86618
86543
-
Ala
CGC
[ENA]
¡û
>WENV183666090
ORJL010519689
[ORJL] groundwater metagenome; groundwater
2054
2129
+
Ala
CGC
[ENA]
¢þ
>WENV183696803
OUME01000026
[OUME] metagenome; soil
68096
68171
+
Ala
CGC
[ENA]
¢þ
>WENV183697136
OUNJ010014069
[OUNJ] metagenome; soil
1628
1553
-
Ala
CGC
[ENA]
¢þ
>WENV183735337
PJUA01013292
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
60
135
+
Ala
CGC
[ENA]
¢þ
>WENV183735597
PJUB01000115
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
25934
25859
-
Ala
CGC
[ENA]
¢þ
>WENV183736258
PJUC01000304
[PJUC] soil metagenome; Soil enriched on filter paper
11692
11617
-
Ala
CGC
[ENA]
¢þ
>WENV183741432
PJUG01000011
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
88987
89062
+
Ala
CGC
[ENA]
¢þ
>WENV183741962
PJUH01000020
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
109108
109183
+
Ala
CGC
[ENA]
¢þ
>WENV170011549
APMI01073578
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2132
2207
+
Ala
CGC
[ENA]
¢þ
>WENV170646105
JQGF01076886
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
74
149
+
Ala
CGC
[ENA]
¢þ
>WENV170710216
LNFM01001317
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12638
12563
-
Ala
CGC
[ENA]
¢þ
>C181078497
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
2096991
2096916
-
Ala
CGC
-
¡û
>C181158446
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
1958489
1958414
-
Ala
CGC
-
¡û
>C181159375
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
2331795
2331870
+
Ala
CGC
-
¡û
>W09100898
AADF01000008
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
122299
122374
+
Ala
CGC
[ENA]
¡û
>W141816794
JQKD01000012
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
79621
79546
-
Ala
CGC
[ENA]
¡û
>W1910792809
MRCN01000001
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
511805
511730
-
Ala
CGC
[ENA]
¡û
>W1911494347
OBKE01005258
Unclassified
bacterium [OBKE]
378
303
-
Ala
CGC
[ENA]
¡û
>W1911502795
OEQA01000007
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
268898
268823
-
Ala
CGC
[ENA]
¡û
>W1911709200
QPIB01000001
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
481505
481580
+
Ala
CGC
[ENA]
¡û
>W1911740724
QUSW01000002
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
293327
293402
+
Ala
CGC
[ENA]
¡û
>W1911766092
QXDH01000003
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
858098
858023
-
Ala
CGC
[ENA]
¡û
>W1911775325
QXMN01000026
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
68786
68861
+
Ala
CGC
[ENA]
¡û
>W1810759447
QPJK01000010
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
76535
76460
-
Ala
CGC
[ENA]
¡û
>W1810763098
QQAV01000004
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
146535
146610
+
Ala
CGC
[ENA]
¡û
>C151090588
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
320994
321069
+
Ala
CGC
-
¡û
>W1510766084
JANU01000023
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
130879
130804
-
Ala
CGC
[ENA]
¡û
>W1511352956
JROV01000226
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
3519
3594
+
Ala
CGC
[ENA]
¡û
>W1511577549
LAQU01000003
Betaproteobacteria
Robbsia andropogonis ICMP2807 [LAQU]
242075
242000
-
Ala
CGC
[ENA]
¡û
>W121084961
AKIW01000027
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
36923
36998
+
Ala
CGC
[ENA]
¡û
>W1610072133
BCUS01000001
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
147805
147880
+
Ala
CGC
[ENA]
¡û
>W1610072236
BCUU01000002
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
102039
101964
-
Ala
CGC
[ENA]
¡û
>W1610591931
LDSL01000038
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
85102
85027
-
Ala
CGC
[ENA]
¡û
>W1610685591
LKTU01000017
Betaproteobacteria
Variovorax paradoxus [LKTU]
28669
28594
-
Ala
CGC
[ENA]
¡û
>W1610685633
LKTV01000003
Betaproteobacteria
Variovorax paradoxus [LKTV]
28668
28593
-
Ala
CGC
[ENA]
¡û
>W1610685701
LKTW01000081
Betaproteobacteria
Variovorax paradoxus [LKTW]
13393
13468
+
Ala
CGC
[ENA]
¡û
>W1610685736
LKTX01000012
Betaproteobacteria
Variovorax paradoxus [LKTX]
94328
94403
+
Ala
CGC
[ENA]
¡û
>W1610685786
LKTY01000003
Betaproteobacteria
Variovorax paradoxus [LKTY]
28669
28594
-
Ala
CGC
[ENA]
¡û
>W1610685837
LKTZ01000001
Betaproteobacteria
Variovorax paradoxus [LKTZ]
4921
4846
-
Ala
CGC
[ENA]
¡û
>W1610723083
LMDC01000027
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
87604
87529
-
Ala
CGC
[ENA]
¡û
>W1610723460
LMDK01000003
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
108848
108773
-
Ala
CGC
[ENA]
¡û
>W1610724039
LMDU01000016
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
82670
82745
+
Ala
CGC
[ENA]
¡û
>W1610724807
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
511835
511760
-
Ala
CGC
[ENA]
¡û
>W1610725420
LMEV01000012
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
112828
112753
-
Ala
CGC
[ENA]
¡û
>W1610726441
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
863813
863888
+
Ala
CGC
[ENA]
¡û
>W1610728434
LMHE01000016
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
296028
296103
+
Ala
CGC
[ENA]
¡û
>W1610735839
LMMV01000004
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
147018
146943
-
Ala
CGC
[ENA]
¡û
>W1610913505
LSJH01000966
Betaproteobacteria
Xylophilus ampelinus [LSJH]
11786
11711
-
Ala
CGC
[ENA]
¡û
>W1610954358
LVHG01000029
Betaproteobacteria
Variovorax paradoxus [LVHG]
153399
153474
+
Ala
CGC
[ENA]
¡û
>W1710069335
BCUS01000001
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
147805
147880
+
Ala
CGC
[ENA]
¡û
>W1710069438
BCUU01000002
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
102039
101964
-
Ala
CGC
[ENA]
¡û
>W1710506175
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
211573
211498
-
Ala
CGC
[ENA]
¡û
>W1710512942
FMZU01000008
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
76701
76776
+
Ala
CGC
[ENA]
¡û
>W1710534025
FNRO01000002
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
240067
239992
-
Ala
CGC
[ENA]
¡û
>W1710538176
FNUI01000016
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
121728
121653
-
Ala
CGC
[ENA]
¡û
>W1710539586
FNVM01000017
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
99749
99674
-
Ala
CGC
[ENA]
¡û
>W1710545289
FOBJ01000005
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
120962
120887
-
Ala
CGC
[ENA]
¡û
>W1710557171
FOKS01000017
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
99749
99674
-
Ala
CGC
[ENA]
¡û
>W1710562283
FOOV01000019
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
99749
99674
-
Ala
CGC
[ENA]
¡û
>W1710569248
FOUG01000003
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
381753
381678
-
Ala
CGC
[ENA]
¡û
>W1710597077
FTMY01000001
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
211618
211543
-
Ala
CGC
[ENA]
¡û
>W1710711211
LDSL01000038
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
85102
85027
-
Ala
CGC
[ENA]
¡û
Identical group No.565162 (7 seq.)
>W131225565
AUDR01000014
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
313630
313555
-
Ala
CGC
[ENA]
¡û
>W1711391795
MEMB01000002
Alphaproteobacteria
Alphaproteobacteria bacterium GWF2_58_20 [MEMB]
641435
641360
-
Ala
CGC
[ENA]
¡û
>WENV170554029
CXWK01043670
[CXWK] wastewater metagenome; activated sludge
7781
7856
+
Ala
CGC
[ENA]
¢þ
>WENV170574885
FLYN01014803
[FLYN] hot springs metagenome; Sediment
197
122
-
Ala
CGC
[ENA]
¢þ
>W1510741363
CYHH01000002
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
253291
253216
-
Ala
CGC
[ENA]
¡û
>W1610632364
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
253291
253216
-
Ala
CGC
[ENA]
¡û
>W1710766750
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
253291
253216
-
Ala
CGC
[ENA]
¡û
Identical group No.572232 (1 seq.)
>C191003432
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1216889
1216964
+
Ala
CGC
-
¡û
Identical group No.586108 (2 seq.)
>W1711506553
MKWM01000073
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
181738
181813
+
Ala
CGC
[ENA]
¡û
>W1711583427
MNXE01000043
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
14860
14785
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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