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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1184 (5 seq.)
>W1711386467
MEFK01000286
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
3551
3455
-
SeC
TCA
[ENA]
¡û
>W1711386468
MEFK01000289
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
5775
5679
-
SeC
TCA
[ENA]
¡û
>W1711387384
MEGP01000002
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
114471
114375
-
SeC
TCA
[ENA]
¡û
>W1711414488
MGZN01000783
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
412
316
-
SeC
TCA
[ENA]
¡û
>W1711506493
MKWL01000011
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
46161
46065
-
SeC
TCA
[ENA]
¡û
Identical group No.4647 (4 seq.)
>W131225556
AUDR01000012
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
225276
225371
+
SeC
TCA
[ENA]
¡û
>W1520000429
CYHH01000004
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
166246
166151
-
SeC
TCA
[ENA]
¡û
>W1620001166
LIPU01000004
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
166246
166151
-
SeC
TCA
[ENA]
¡û
>W1720001589
LIPU01000004
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
166246
166151
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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