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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46458 (1 seq.)
>W1711414521
MGZO01000106
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
70055
70144
+
Ser
TGA
[ENA]
¡û
Identical group No.60219 (3 seq.)
>W1711387390
MEGP01000011
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
26166
26077
-
Ser
TGA
[ENA]
¡û
>W1711414475
MGZN01000189
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
1336
1425
+
Ser
TGA
[ENA]
¡û
>W1711506503
MKWL01000021
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
296556
296645
+
Ser
TGA
[ENA]
¡û
Identical group No.60347 (1 seq.)
>W131225589
AUDR01000019
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
73548
73459
-
Ser
TGA
[ENA]
¡û
Identical group No.61213 (1 seq.)
>C191003443
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1807009
1806920
-
Ser
TGA
-
¡û
Identical group No.65392 (3 seq.)
>W1510741387
CYHH01000012
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
31984
32073
+
Ser
TGA
[ENA]
¡û
>W1610632388
LIPU01000012
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
31984
32073
+
Ser
TGA
[ENA]
¡û
>W1710766774
LIPU01000012
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
31984
32073
+
Ser
TGA
[ENA]
¡û
Identical group No.65521 (1 seq.)
>W1711583437
MNXE01000063
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
31059
31148
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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