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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Lactococcus
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658339 (49 seq.)
>WENV180177014
OAWD01017388
[OAWD] human gut metagenome; faeces
318
247
-
Pro
TGG
[ENA]
¢þ
>WENV180244420
OBDK01056341
[OBDK] human gut metagenome; human gut
100
171
+
Pro
TGG
[ENA]
¢þ
>WENV180489027
OBZR01006269
[OBZR] human gut metagenome; faeces
1263
1334
+
Pro
TGG
[ENA]
¢þ
>WENV181024767
ODWX01190687
[ODWX] human metagenome; G_DNA_Stool
118
47
-
Pro
TGG
[ENA]
¢þ
>WENV181039973
ODXQ01092078
[ODXQ] human metagenome; G_DNA_Tongue dorsum
118
47
-
Pro
TGG
[ENA]
¢þ
>WENV181685095
OGOV01079442
[OGOV] human gut metagenome; faeces
135
206
+
Pro
TGG
[ENA]
¢þ
>WENV181709759
OGPN01003862
[OGPN] human gut metagenome; faeces
6966
7037
+
Pro
TGG
[ENA]
¢þ
>WENV182283982
OHVK01028138
[OHVK] human gut metagenome; feces
484
413
-
Pro
TGG
[ENA]
¢þ
>WENV182320163
OHYH01021651
[OHYH] human gut metagenome; feces
506
577
+
Pro
TGG
[ENA]
¢þ
>WENV182326899
OHYV01001938
[OHYV] human gut metagenome; feces
365
294
-
Pro
TGG
[ENA]
¢þ
>WENV182600169
OJJF01023352
[OJJF] metagenome; faeces
406
477
+
Pro
TGG
[ENA]
¢þ
>WENV182622207
OJKJ01010783
[OJKJ] metagenome; faeces
1466
1537
+
Pro
TGG
[ENA]
¢þ
>WENV183130160
OLOA01001000
[OLOA] human gut metagenome; faeces
29041
29112
+
Pro
TGG
[ENA]
¢þ
>WENV183132937
OLOB01013724
[OLOB] human gut metagenome; faeces
204
133
-
Pro
TGG
[ENA]
¢þ
>WENV183199234
OLPV01023791
[OLPV] human gut metagenome; faeces
172
101
-
Pro
TGG
[ENA]
¢þ
>WENV183201594
OLPW01061781
[OLPW] human gut metagenome; faeces
484
413
-
Pro
TGG
[ENA]
¢þ
>WENV183314619
OLVR01003918
[OLVR] human gut metagenome; faeces
8617
8688
+
Pro
TGG
[ENA]
¢þ
>WENV183362670
OLXK01018187
[OLXK] human gut metagenome; feces
1749
1820
+
Pro
TGG
[ENA]
¢þ
>WENV183374755
OLXZ01013543
[OLXZ] human gut metagenome; feces
215
144
-
Pro
TGG
[ENA]
¢þ
>WENV183379230
OLYC01012724
[OLYC] human gut metagenome; feces
2538
2609
+
Pro
TGG
[ENA]
¢þ
>WENV183432674
OMBR01020085
[OMBR] human gut metagenome; feces
945
1016
+
Pro
TGG
[ENA]
¢þ
>WENV183436447
OMCC01005749
[OMCC] human gut metagenome; feces
496
425
-
Pro
TGG
[ENA]
¢þ
>WENV183438133
OMCE01006125
[OMCE] human gut metagenome; feces
1827
1898
+
Pro
TGG
[ENA]
¢þ
>WENV183450828
OMDA01006308
[OMDA] human gut metagenome; feces
244
173
-
Pro
TGG
[ENA]
¢þ
>WENV183456615
OMDK01006619
[OMDK] human gut metagenome; feces
245
174
-
Pro
TGG
[ENA]
¢þ
>WENV183465301
OMEA01006858
[OMEA] human gut metagenome; feces
245
174
-
Pro
TGG
[ENA]
¢þ
>PHG0100007
AF009630
Siphoviridae
Lactococcus virus bIL170 Sfi21 (AF009630)
31308
31379
+
Pro
TGG
[ENA]
¡û
>PHG0100275
AY375289
Siphoviridae
Lactococcus virus bIL170 T2L (AY375289)
283
354
+
Pro
TGG
[ENA]
¡û
>PHG181004005
KY554760
Siphoviridae
Lactococcus phage R3.4 (KY554760)
27035
27106
+
Pro
TGG
[ENA]
¡û
>PHG181004007
KY554761
Siphoviridae
Lactococcus phage R31 (KY554761)
26828
26899
+
Pro
TGG
[ENA]
¡û
>PHG181005888
MF448557
Siphoviridae
Lactococcus phage 37201 (MF448557)
30774
30845
+
Pro
TGG
[ENA]
¡û
>PHG181005890
MF448559
Siphoviridae
Lactococcus phage 38507 (MF448559)
31805
31876
+
Pro
TGG
[ENA]
¡û
>PHG181005907
MF448571
Lactococcus
Lactococcus phage 96403
26330
26401
+
Pro
TGG
[ENA]
¡û
>PHG181006088
MF775682
Siphoviridae
Lactococcus phage LP9609 (MF775682)
30637
30708
+
Pro
TGG
[ENA]
¡û
>PHG181006090
MF775683
Siphoviridae
Lactococcus phage LP9701 (MF775683)
30237
30308
+
Pro
TGG
[ENA]
¡û
>PHG181006092
MF775684
Siphoviridae
Lactococcus phage LP9801 (MF775684)
29896
29967
+
Pro
TGG
[ENA]
¡û
>PHG181006094
MF775685
Siphoviridae
Lactococcus phage LP9903 (MF775685)
29249
29320
+
Pro
TGG
[ENA]
¡û
>PHG181006096
MF775686
Siphoviridae
Lactococcus phage LP9908 (MF775686)
29363
29434
+
Pro
TGG
[ENA]
¡û
>PHG181006098
MF775687
Siphoviridae
Lactococcus phage LP0004a (MF775687)
29786
29857
+
Pro
TGG
[ENA]
¡û
>PHG181006100
MF775688
Siphoviridae
Lactococcus phage LP0004b (MF775688)
30646
30717
+
Pro
TGG
[ENA]
¡û
>PHG181006102
MF775689
Siphoviridae
Lactococcus phage LP0004c (MF775689)
29737
29808
+
Pro
TGG
[ENA]
¡û
>PHG181006104
MF775690
Siphoviridae
Lactococcus phage LP0004d (MF775690)
29797
29868
+
Pro
TGG
[ENA]
¡û
>PHG181006106
MF775691
Siphoviridae
Lactococcus phage LP0109 (MF775691)
30235
30306
+
Pro
TGG
[ENA]
¡û
>PHG181006108
MF775692
Siphoviridae
Lactococcus phage LP0202 (MF775692)
29932
30003
+
Pro
TGG
[ENA]
¡û
>PHG181006110
MF775693
Siphoviridae
Lactococcus phage LP0209 (MF775693)
30035
30106
+
Pro
TGG
[ENA]
¡û
>PHG181006112
MF775694
Siphoviridae
Lactococcus phage LP0212 (MF775694)
29608
29679
+
Pro
TGG
[ENA]
¡û
>PHG181006114
MF775695
Siphoviridae
Lactococcus phage LP0304 (MF775695)
30036
30107
+
Pro
TGG
[ENA]
¡û
>PHG181006116
MF775696
Siphoviridae
Lactococcus phage LP0509 (MF775696)
30239
30310
+
Pro
TGG
[ENA]
¡û
>PHG181006118
MF775697
Siphoviridae
Lactococcus phage LP0604 (MF775697)
30239
30310
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK