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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323453 (7 seq.)
>W141150779
AXAQ01000007
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
95780
95704
-
Arg
CCT
[ENA]
¡û
>WENV170845501
MDTA01025077
[MDTA] marine metagenome; seawater
1348
1272
-
Arg
CCT
[ENA]
¢þ
>WENV170962267
MRWF01010663
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
84670
84746
+
Arg
CCT
[ENA]
¢þ
>WENV170963181
MRWG01000031
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
133989
134065
+
Arg
CCT
[ENA]
¢þ
>SRA1000868
SRR001048.87419
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
75
-1
-
Arg
CCT
[SRA]
>SRA1000869
SRR001048.100816
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
75
-1
-
Arg
CCT
[SRA]
>SRA1000887
SRR001048.307153
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
75
-1
-
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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