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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223030 (3 seq.)
>ENV08000865
ABMK01078433
marine metagenome; microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)
98
18
-
Leu
TAG
[ENA]
¡û
>SRA1000872
SRR001048.138464
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
98
18
-
Leu
TAG
[SRA]
>SRA1000888
SRR001048.314435
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
98
18
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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