This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, viral fraction from water of Palmyra (SRP000141)
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.206021 (43 seq.)
>WENV183711598
PDWI01074282
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
84
8
-
Pro
TGG
[ENA]
¢þ
>ENV08000897
ABML01061803
Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)
111
35
-
Pro
TGG
[ENA]
¡û
>WENV183722203
PDWJ01111422
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1128
1204
+
Pro
TGG
[ENA]
¢þ
>WENV183722211
PDWJ01111902
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
630
706
+
Pro
TGG
[ENA]
¢þ
>WENV170202615
CEPR01082309
[CEPR] marine metagenome genome assembly TARA_039_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
492
568
+
Pro
TGG
[ENA]
¢þ
>WENV170572641
FLOH01001086
[FLOH] marine metagenome; water
2549
2473
-
Pro
TGG
[ENA]
¢þ
>WENV170577197
FRDC01003856
[FRDC] freshwater metagenome; water
59319
59395
+
Pro
TGG
[ENA]
¢þ
>WENV170876598
MDTC01043085
[MDTC] marine metagenome; seawater
38009
37933
-
Pro
TGG
[ENA]
¢þ
>W1910665295
MCHY01000005
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
2369
2445
+
Pro
TGG
[ENA]
¡û
>SRA1000905
SRR001049.70973
Line Islands Corals, viral fraction from water of Palmyra (SRP000141)
111
35
-
Pro
TGG
[SRA]
>W1510045017
CCMI01000055
Bacillota
Aneurinibacillus migulanus [CCMI]
349
425
+
Pro
TGG
[ENA]
¡û
>W1510045031
CCMI01000079
Bacillota
Aneurinibacillus migulanus [CCMI]
168
92
-
Pro
TGG
[ENA]
¡û
>W1510045053
CCMI01000093
Bacillota
Aneurinibacillus migulanus [CCMI]
637
713
+
Pro
TGG
[ENA]
¡û
>W1510045060
CCMI01000098
Bacillota
Aneurinibacillus migulanus [CCMI]
91
167
+
Pro
TGG
[ENA]
¡û
>W1510045073
CCMI01000104
Bacillota
Aneurinibacillus migulanus [CCMI]
20214
20138
-
Pro
TGG
[ENA]
¡û
>W1510045097
CCMI01000143
Bacillota
Aneurinibacillus migulanus [CCMI]
582152
582076
-
Pro
TGG
[ENA]
¡û
>W1510045130
CCMI01000196
Bacillota
Aneurinibacillus migulanus [CCMI]
171
95
-
Pro
TGG
[ENA]
¡û
>W1510045145
CCMJ01000071
Bacillota
Aneurinibacillus migulanus [CCMJ]
349
425
+
Pro
TGG
[ENA]
¡û
>W1510045160
CCMJ01000090
Bacillota
Aneurinibacillus migulanus [CCMJ]
353
429
+
Pro
TGG
[ENA]
¡û
>W1510045173
CCMJ01000091
Bacillota
Aneurinibacillus migulanus [CCMJ]
91
167
+
Pro
TGG
[ENA]
¡û
>W1510045199
CCMJ01000133
Bacillota
Aneurinibacillus migulanus [CCMJ]
772
848
+
Pro
TGG
[ENA]
¡û
>W1510045208
CCMJ01000139
Bacillota
Aneurinibacillus migulanus [CCMJ]
75586
75510
-
Pro
TGG
[ENA]
¡û
>W1510045254
CCMJ01000168
Bacillota
Aneurinibacillus migulanus [CCMJ]
168
92
-
Pro
TGG
[ENA]
¡û
>W1510045256
CCMJ01000173
Bacillota
Aneurinibacillus migulanus [CCMJ]
1
77
+
Pro
TGG
[ENA]
¡û
>W1511522813
JYBN01000063
Bacillota
Aneurinibacillus migulanus nagano [JYBN]
349
425
+
Pro
TGG
[ENA]
¡û
>W1511522828
JYBN01000080
Bacillota
Aneurinibacillus migulanus nagano [JYBN]
353
429
+
Pro
TGG
[ENA]
¡û
>W1511522861
JYBN01000109
Bacillota
Aneurinibacillus migulanus nagano [JYBN]
772
848
+
Pro
TGG
[ENA]
¡û
>W1511522868
JYBN01000110
Bacillota
Aneurinibacillus migulanus nagano [JYBN]
75586
75510
-
Pro
TGG
[ENA]
¡û
>W1511522921
JYBO01000053
Bacillota
Aneurinibacillus migulanus NCTC 7096 [JYBO]
349
425
+
Pro
TGG
[ENA]
¡û
>W1511522951
JYBO01000075
Bacillota
Aneurinibacillus migulanus NCTC 7096 [JYBO]
637
713
+
Pro
TGG
[ENA]
¡û
>W1511522969
JYBO01000081
Bacillota
Aneurinibacillus migulanus NCTC 7096 [JYBO]
20214
20138
-
Pro
TGG
[ENA]
¡û
>W1511522990
JYBO01000105
Bacillota
Aneurinibacillus migulanus NCTC 7096 [JYBO]
582152
582076
-
Pro
TGG
[ENA]
¡û
>WENV045839
AACY022551851
Marine microbial communities from Global Ocean Sampling (GOS)
368
444
+
Pro
TGG
[ENA]
>W1511706535
LGUG01000004
Bacillota
Aneurinibacillus migulanus DSM 2895 [LGUG]
542
618
+
Pro
TGG
[ENA]
¡û
>W1610638125
LIXL01000008
Bacillota
Aneurinibacillus migulanus [LIXL]
78
2
-
Pro
TGG
[ENA]
¡û
>W1610638135
LIXL01000055
Bacillota
Aneurinibacillus migulanus [LIXL]
6
82
+
Pro
TGG
[ENA]
¡û
>W1610638167
LIXL01000084
Bacillota
Aneurinibacillus migulanus [LIXL]
490
566
+
Pro
TGG
[ENA]
¡û
>W1710518593
FNED01000001
Bacillota
Aneurinibacillus migulanus [FNED]
582270
582194
-
Pro
TGG
[ENA]
¡û
>W1710518632
FNED01000041
Bacillota
Aneurinibacillus migulanus [FNED]
560
636
+
Pro
TGG
[ENA]
¡û
>W1710518656
FNED01000058
Bacillota
Aneurinibacillus migulanus [FNED]
20478
20402
-
Pro
TGG
[ENA]
¡û
>W1710773992
LIXL01000008
Bacillota
Aneurinibacillus migulanus [LIXL]
78
2
-
Pro
TGG
[ENA]
¡û
>W1710774002
LIXL01000055
Bacillota
Aneurinibacillus migulanus [LIXL]
6
82
+
Pro
TGG
[ENA]
¡û
>W1710774034
LIXL01000084
Bacillota
Aneurinibacillus migulanus [LIXL]
490
566
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK