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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244865 (1 seq.)
>A171006843
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1315042
1314968
-
Ala
CGC
-
¡û
Identical group No.261125 (1 seq.)
>A171006389
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2884340
2884415
+
Ala
CGC
-
¡û
Identical group No.594132 (1 seq.)
>A171007489
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
179766
179691
-
Ala
CGC
-
¡û
Identical group No.720472 (3 seq.)
>A171006022
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1652602
1652676
+
Ala
CGC
-
¡û
>W1910126243
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
15459
15533
+
Ala
CGC
[ENA]
¡û
>W1610617249
LGTD01000387
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
1518
1444
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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