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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271180 (10 seq.)
>A173000112
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
135957
136031
+
Lys
CTT
-
¡û
>A173000119
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
75444
75518
+
Lys
CTT
-
¡û
>A173000262
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1685781
1685707
-
Lys
CTT
-
¡û
>W1930002157
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
58898
58824
-
Lys
CTT
[ENA]
¡û
>W1630000191
AEXL02000055
Nitrososphaerota
Candidatus Nitrosopumilus salaria salaria BD31 [AEXL]
1536
1462
-
Lys
CTT
[ENA]
¡û
>W1630000367
AJVI01000005
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
123650
123726
+
Lys
CTT
[ENA]
¡û
>W1630000374
AJVJ01000015
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
74356
74432
+
Lys
CTT
[ENA]
¡û
>W1630000382
AJVJ01000045
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
25232
25306
+
Lys
CTT
[ENA]
¡û
>W1630010290
LFLC01000025
Nitrososphaerota
Nitrosopumilus sp. LS_AOA [LFLC]
197919
197843
-
Lys
CTT
[ENA]
¡û
>W1630010755
LGTD01000371
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
612
686
+
Lys
CTT
[ENA]
¡û
Identical group No.360691 (3 seq.)
>A173000342
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1204993
1204919
-
Lys
CTT
-
¡û
>W1630011055
LIAL01000104
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL]
2828
2902
+
Lys
CTT
[ENA]
¡û
>W1630016215
LQMW01000024
Nitrososphaerota
Nitrosopumilus sp. Nsub [LQMW]
26486
26412
-
Lys
CTT
[ENA]
¡û
Identical group No.391926 (4 seq.)
>A179000471
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
846997
847092
+
Lys
CTT
-
¡û
>A179000495
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
2318357
2318452
+
Lys
CTT
-
¡û
>A175000161
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
846997
847093
+
Lys
CTT
-
¡û
>A175000167
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
2318357
2318453
+
Lys
CTT
-
¡û
Identical group No.399313 (1 seq.)
>A178000736
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
163336
163425
+
Lys
CTT
-
¡û
Identical group No.440190 (1 seq.)
>A178000555
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
196639
196728
+
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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