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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29639 (1 seq.)
>A171006048
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
800561
800653
+
Phe
GAA
-
¡û
Identical group No.301562 (4 seq.)
>A171003404
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
783474
783400
-
Phe
GAA
-
¡û
>A171005916
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1091905
1091980
+
Phe
GAA
-
¡û
>W1610005394
AJVI01000002
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
96120
96046
-
Phe
GAA
[ENA]
¡û
>W1610005440
AJVJ01000025
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
96114
96040
-
Phe
GAA
[ENA]
¡û
Identical group No.301943 (1 seq.)
>A179000673
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1596783
1596880
+
Phe
GAA
-
¡û
Identical group No.391919 (2 seq.)
>A173000183
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2431587
2431661
+
Phe
GAA
-
¡û
>A173000194
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1293547
1293621
+
Phe
GAA
-
¡û
Identical group No.429437 (1 seq.)
>A171006017
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
983607
983682
+
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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