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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.726708 (6 seq.)
>A173000174
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
86458
86387
-
Gln
TTG
-
¡û
>W1930011848
LXWN01000002
Nitrososphaerota
Candidatus Nitrosopelagicus brevis brevis U25 [LXWN]
246641
246570
-
Gln
TTG
[ENA]
¡û
>W1630018162
LUOZ01000048
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S25_B3 [LUOZ]
951
880
-
Gln
TTG
[ENA]
¡û
>W1630018174
LUPB01000064
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S31_B2 [LUPB]
19115
19186
+
Gln
TTG
[ENA]
¡û
>W1630018180
LUPD01000029
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S37_B6 [LUPD]
652
723
+
Gln
TTG
[ENA]
¡û
>W1630018188
LUPE01000073
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S43_B1 [LUPE]
359
288
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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