This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506342 (8 seq.)
>ENV08001176
ABMR01012762
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
93
18
-
Arg
CCG
[ENA]
¡û
>ENV08001817
ABOG01012225
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
93
21
-
Arg
CCG
[ENA]
¡û
>W1910006695
BBJO01000005
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
37569
37497
-
Arg
CCG
[ENA]
¡û
>W1910228445
FNPB01000018
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
20359
20287
-
Arg
CCG
[ENA]
¡û
>W1911709656
QPLR01000007
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
30194
30121
-
Arg
CCG
[ENA]
¡û
>W1911769977
QXIJ01000003
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
366902
366974
+
Arg
CCG
[ENA]
¡û
>SRA1001247
SRR001058.10846
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
93
18
-
Arg
CCG
[SRA]
>SRA1013797
SRR023631.22153
High saltern (Pond 5) microbes attempt 1 (SRP001107)
86
11
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK