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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187500 (11 seq.)
>W131063624
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
910511
910427
-
Leu
GAG
[ENA]
¡û
>W131171442
ARGF01000054
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
73137
73221
+
Leu
GAG
[ENA]
¡û
>w014154
AAOF01000015
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
33173
33092
-
Leu
GAG
[ENA]
¡û
>ENV08001177
ABMR01015178
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
18
102
+
Leu
GAG
[ENA]
¡û
>WENV170682764
LFIK01001125
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
20352
20436
+
Leu
GAG
[ENA]
¢þ
>WENV170701835
LKMJ01000046
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
34434
34518
+
Leu
GAG
[ENA]
¢þ
>WENV170703509
LKMJ01012841
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6492
6408
-
Leu
GAG
[ENA]
¢þ
>SRA1001242
SRR001057.12773
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
18
102
+
Leu
GAG
[SRA]
>W1810586386
QFFI01000007
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
69457
69541
+
Leu
GAG
[ENA]
¡û
>C131016218
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
629209
629293
+
Leu
GAG
[Ensembl]
¡û
>W1710549084
FOEG01000002
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
348065
347981
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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