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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238057 (2 seq.)
>ENV08001152
ABMP01027299
saltern metagenome; viral fraction from low salinity saltern in San Diego, CA
101
26
-
Met
CAT
[ENA]
¡û
>SRA1001217
SRR001054.7428
Solar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
101
26
-
Met
CAT
[SRA]
Identical group No.726856 (3 seq.)
>ENV08001156
ABMP01060784
saltern metagenome; viral fraction from low salinity saltern in San Diego, CA
7
81
+
Met
CAT
[ENA]
¡û
>SRA1001213
SRR001053.26009
Solar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
7
81
+
Met
CAT
[SRA]
>SRA1001215
SRR001053.50723
Solar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
7
81
+
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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