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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320989 (5 seq.)
>ENV08001219
ABMU01145711
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
82
+
Lys
CTT
[ENA]
¡û
>ENV08001847
ABOG01029813
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
96
23
-
Lys
CTT
[ENA]
¡û
>ENV08001867
ABOG01052888
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
28
101
+
Lys
CTT
[ENA]
¡û
>ENV08001875
ABOG01063869
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
9
85
+
Lys
CTT
[ENA]
¡û
>SRA1001278
SRR001062.162049
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
6
82
+
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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