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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = AAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151456 (1 seq.)
>W141279017
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
256950
256864
-
Leu
AAG
[ENA]
¡û
Identical group No.199244 (2 seq.)
>W141146857
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
131631
131547
-
Leu
AAG
[ENA]
¡û
>W09132959
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
132006
131922
-
Leu
AAG
[ENA]
¡û
Identical group No.215921 (1 seq.)
>W121017505
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
136638
136554
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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