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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAA
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87940 (6 seq.)
>WENV170008203
AMZC01004395
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
34
121
+
Leu
CAA
[ENA]
¢þ
>WENV170562743
CZCB01004920
[CZCB] anaerobic digester metagenome; anaerobic digester
2991
2904
-
Leu
CAA
[ENA]
¢þ
>WENV170684417
LFRM01037641
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3172
3085
-
Leu
CAA
[ENA]
¢þ
>WENV170968456
MTKW01009484
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2626
2713
+
Leu
CAA
[ENA]
¢þ
>C121008070
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1714106
1714019
-
Leu
CAA
[Ensembl]
¡û
>W1710594064
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1472840
1472927
+
Leu
CAA
[ENA]
¡û
Identical group No.92957 (3 seq.)
>WENV170676912
LDZS01003186
[LDZS] terrestrial metagenome; oil reservoir sample K3
20017
20104
+
Leu
CAA
[ENA]
¢þ
>W1610613280
LGFQ01000006
Synergistota
Synergistales bacterium 54_24 [LGFQ]
20017
20104
+
Leu
CAA
[ENA]
¡û
>W1710734487
LGFQ01000006
Synergistota
Synergistales bacterium 54_24 [LGFQ]
20017
20104
+
Leu
CAA
[ENA]
¡û
Identical group No.92959 (3 seq.)
>WENV170676964
LDZS01003693
[LDZS] terrestrial metagenome; oil reservoir sample K3
3744
3831
+
Leu
CAA
[ENA]
¢þ
>W09126643
ACJX01000221
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
96984
96897
-
Leu
CAA
[ENA]
¡û
>W1710530835
FNPD01000004
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
155680
155593
-
Leu
CAA
[ENA]
¡û
Identical group No.92961 (4 seq.)
>WENV170676984
LDZS01003874
[LDZS] terrestrial metagenome; oil reservoir sample K3
411
498
+
Leu
CAA
[ENA]
¢þ
>C121005694
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1578215
1578128
-
Leu
CAA
[Ensembl]
¡û
>W1610613346
LGFS01000036
Synergistota
Thermovirga lienii [LGFS]
411
498
+
Leu
CAA
[ENA]
¡û
>W1710734553
LGFS01000036
Synergistota
Thermovirga lienii [LGFS]
411
498
+
Leu
CAA
[ENA]
¡û
Identical group No.109243 (1 seq.)
>W141278947
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
306120
306033
-
Leu
CAA
[ENA]
¡û
Identical group No.116534 (7 seq.)
>C171050528
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1014457
1014543
+
Leu
CAA
-
¡û
>WENV181914666
OGYF01000703
[OGYF] human gut metagenome; faeces
30182
30096
-
Leu
CAA
[ENA]
¢þ
>WENV182031010
OHCS01001249
[OHCS] human gut metagenome; feces
8818
8732
-
Leu
CAA
[ENA]
¢þ
>WENV182212535
OHQG01001255
[OHQG] human gut metagenome; feces
7722
7636
-
Leu
CAA
[ENA]
¢þ
>WENV182215712
OHQM01001561
[OHQM] human gut metagenome; feces
7210
7124
-
Leu
CAA
[ENA]
¢þ
>WENV182883649
OKSB01021864
[OKSB] human gut metagenome; faeces
1183
1097
-
Leu
CAA
[ENA]
¢þ
>WENV182892253
OKSH01046720
[OKSH] human gut metagenome; faeces
356
442
+
Leu
CAA
[ENA]
¢þ
Identical group No.119771 (3 seq.)
>W1711629567
MPPC01000018
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
55001
55087
+
Leu
CAA
[ENA]
¡û
>WENV170724499
LSQX01307927
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9625
9539
-
Leu
CAA
[ENA]
¢þ
>C10100302
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
477552
477638
+
Leu
CAA
[Ensembl]
¡û
Identical group No.122525 (3 seq.)
>WENV170679039
LDZU01006775
[LDZU] terrestrial metagenome; oil reservoir sample SB2
6640
6726
+
Leu
CAA
[ENA]
¢þ
>W1610614486
LGHG01000026
Synergistota
Synergistales bacterium 54_9 [LGHG]
6640
6726
+
Leu
CAA
[ENA]
¡û
>W1710735467
LGHG01000026
Synergistota
Synergistales bacterium 54_9 [LGHG]
6640
6726
+
Leu
CAA
[ENA]
¡û
Identical group No.128546 (4 seq.)
>WENV181989346
OHAO01006807
[OHAO] human gut metagenome; faeces
1642
1556
-
Leu
CAA
[ENA]
¢þ
>WENV183419576
OMAZ01009052
[OMAZ] human gut metagenome; feces
715
801
+
Leu
CAA
[ENA]
¢þ
>W10113045
ADFP01000121
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
50513
50427
-
Leu
CAA
[ENA]
¡û
>W11116272
ADFP01000121
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
50513
50427
-
Leu
CAA
[ENA]
¡û
Identical group No.129529 (2 seq.)
>WENV180810415
ODJK01302860
[ODJK] human metagenome; G_DNA_Subgingival plaque
65
151
+
Leu
CAA
[ENA]
¢þ
>C161104034
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
2124986
2124900
-
Leu
CAA
-
¡û
Identical group No.130295 (1 seq.)
>W11138628
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
484822
484736
-
Leu
CAA
[ENA]
¡û
Identical group No.146010 (2 seq.)
>W1711744519
MUHX01000045
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
7748
7834
+
Leu
CAA
[ENA]
¡û
>WENV183764033
PPYE01312152
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
7897
7983
+
Leu
CAA
[ENA]
¢þ
Identical group No.151455 (1 seq.)
>W141279016
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
365858
365772
-
Leu
CAA
[ENA]
¡û
Identical group No.158021 (3 seq.)
>W1711137621
LVBQ01000038
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1952
1867
-
Leu
CAA
[ENA]
¡û
>W1712039350
NFJQ01000001
Synergistota
Cloacibacillus sp. An23 [NFJQ]
213537
213452
-
Leu
CAA
[ENA]
¡û
>W1610948741
LVBQ01000038
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1952
1867
-
Leu
CAA
[ENA]
¡û
Identical group No.158487 (6 seq.)
>W141701213
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
47208
47123
-
Leu
CAA
[ENA]
¡û
>W1710629250
JPZQ01000046
Synergistota
Synergistes jonesii [JPZQ]
233
148
-
Leu
CAA
[ENA]
¡û
>W1710629294
JPZR01000036
Synergistota
Synergistes jonesii [JPZR]
1852
1767
-
Leu
CAA
[ENA]
¡û
>W1710629336
JPZS01000039
Synergistota
Synergistes jonesii [JPZS]
235
150
-
Leu
CAA
[ENA]
¡û
>W1710631819
JQEK01000007
Synergistota
Synergistes jonesii [JQEK]
235
150
-
Leu
CAA
[ENA]
¡û
>W1710631884
JQEL01000041
Synergistota
Synergistes jonesii [JQEL]
235
150
-
Leu
CAA
[ENA]
¡û
Identical group No.160052 (5 seq.)
>WENV181230546
OFEK01001458
[OFEK] activated sludge metagenome; Anaerobic digester
716
631
-
Leu
CAA
[ENA]
¢þ
>WENV170678361
LDZT01014043
[LDZT] terrestrial metagenome; oil reservoir sample SB1
975
890
-
Leu
CAA
[ENA]
¢þ
>WENV170678602
LDZU01003286
[LDZU] terrestrial metagenome; oil reservoir sample SB2
605
690
+
Leu
CAA
[ENA]
¢þ
>W1610613713
LGGE01000036
Synergistota
Synergistales bacterium 57_84 [LGGE]
975
890
-
Leu
CAA
[ENA]
¡û
>W1710734866
LGGE01000036
Synergistota
Synergistales bacterium 57_84 [LGGE]
975
890
-
Leu
CAA
[ENA]
¡û
Identical group No.161711 (5 seq.)
>WENV181908682
OGYB01000289
[OGYB] human gut metagenome; faeces
25993
25908
-
Leu
CAA
[ENA]
¢þ
>WENV182172632
OHMY01025728
[OHMY] human gut metagenome; feces
307
222
-
Leu
CAA
[ENA]
¢þ
>WENV182537829
OIXH01020551
[OIXH] human gut metagenome; faeces
147
232
+
Leu
CAA
[ENA]
¢þ
>WENV183038569
OLGB01000779
[OLGB] human gut metagenome; faeces
96
181
+
Leu
CAA
[ENA]
¢þ
>W121000470
ACUH01000039
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
70025
70110
+
Leu
CAA
[ENA]
¡û
Identical group No.166477 (3 seq.)
>W141146839
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
109599
109514
-
Leu
CAA
[ENA]
¡û
>W09132993
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
113851
113766
-
Leu
CAA
[ENA]
¡û
>W121017473
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
218423
218338
-
Leu
CAA
[ENA]
¡û
Identical group No.174556 (1 seq.)
>W121031640
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1279960
1280045
+
Leu
CAA
[ENA]
¡û
Identical group No.175566 (1 seq.)
>W09108906
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
230174
230089
-
Leu
CAA
[ENA]
¡û
Identical group No.175567 (3 seq.)
>WENV181409141
OGCI01000009
[OGCI] hot springs metagenome; Hot spring water
228377
228292
-
Leu
CAA
[ENA]
¢þ
>W09110128
ABUW01000003
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
228861
228776
-
Leu
CAA
[ENA]
¡û
>C10113019
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
592932
592847
-
Leu
CAA
[Ensembl]
¡û
Identical group No.176398 (1 seq.)
>W1710608694
FXBB01000013
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
35141
35056
-
Leu
CAA
[ENA]
¡û
Identical group No.178518 (1 seq.)
>W141452013
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
967102
967187
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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