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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264344 (1 seq.)
>W121031609
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
287436
287513
+
Trp
CCA
[ENA]
¡û
Identical group No.363243 (3 seq.)
>W141146829
AWWC01000001
Synergistota
Jonquetella sp. BV3C21 [AWWC]
261
337
+
Trp
CCA
[ENA]
¡û
>W09132986
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
118927
118851
-
Trp
CCA
[ENA]
¡û
>W121017515
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
209774
209698
-
Trp
CCA
[ENA]
¡û
Identical group No.374081 (1 seq.)
>W131157314
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11705
11629
-
Trp
CCA
[ENA]
¡û
Identical group No.423923 (1 seq.)
>W09108890
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
421985
421909
-
Trp
CCA
[ENA]
¡û
Identical group No.429602 (1 seq.)
>W1710608701
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
457
533
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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