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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245163 (3 seq.)
>W1712039377
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
85208
85131
-
Pro
CGG
[ENA]
¡û
>W11138616
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
269701
269778
+
Pro
CGG
[ENA]
¡û
>W121031622
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
710879
710956
+
Pro
CGG
[ENA]
¡û
Identical group No.245582 (6 seq.)
>W141701191
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
57954
57877
-
Pro
CGG
[ENA]
¡û
>W1710629234
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
55911
55834
-
Pro
CGG
[ENA]
¡û
>W1710629277
JPZR01000002
Synergistota
Synergistes jonesii [JPZR]
40467
40390
-
Pro
CGG
[ENA]
¡û
>W1710629320
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
55911
55834
-
Pro
CGG
[ENA]
¡û
>W1710631851
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
128876
128953
+
Pro
CGG
[ENA]
¡û
>W1710631868
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
55910
55833
-
Pro
CGG
[ENA]
¡û
Identical group No.266497 (1 seq.)
>W1710608692
FXBB01000012
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
52899
52976
+
Pro
CGG
[ENA]
¡û
Identical group No.268667 (1 seq.)
>C121005697
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1279855
1279778
-
Pro
CGG
[Ensembl]
¡û
Identical group No.268778 (1 seq.)
>W141278990
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
851084
851161
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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