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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGG
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236092 (3 seq.)
>WENV170676933
LDZS01003221
[LDZS] terrestrial metagenome; oil reservoir sample K3
543
621
+
Pro
CGG
[ENA]
¢þ
>W1610613301
LGFQ01000041
Synergistota
Synergistales bacterium 54_24 [LGFQ]
543
621
+
Pro
CGG
[ENA]
¡û
>W1710734508
LGFQ01000041
Synergistota
Synergistales bacterium 54_24 [LGFQ]
543
621
+
Pro
CGG
[ENA]
¡û
Identical group No.243282 (10 seq.)
>C171050533
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1217363
1217440
+
Pro
CGG
-
¡û
>WENV181409404
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
82076
81999
-
Pro
CGG
[ENA]
¢þ
>WENV181914879
OGYF01001633
[OGYF] human gut metagenome; faeces
3957
4034
+
Pro
CGG
[ENA]
¢þ
>WENV182031212
OHCS01005482
[OHCS] human gut metagenome; feces
1002
925
-
Pro
CGG
[ENA]
¢þ
>WENV182180468
OHNO01001234
[OHNO] human gut metagenome; feces
1833
1910
+
Pro
CGG
[ENA]
¢þ
>WENV182212651
OHQG01002915
[OHQG] human gut metagenome; feces
5272
5195
-
Pro
CGG
[ENA]
¢þ
>WENV182215720
OHQM01001624
[OHQM] human gut metagenome; feces
5248
5171
-
Pro
CGG
[ENA]
¢þ
>WENV182883971
OKSB01084626
[OKSB] human gut metagenome; faeces
536
459
-
Pro
CGG
[ENA]
¢þ
>W09110131
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
32579
32656
+
Pro
CGG
[ENA]
¡û
>C10112975
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
836200
836277
+
Pro
CGG
[Ensembl]
¡û
Identical group No.244957 (3 seq.)
>WENV170008288
AMZC01007770
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1286
1363
+
Pro
CGG
[ENA]
¢þ
>C121008072
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1452705
1452628
-
Pro
CGG
[Ensembl]
¡û
>W1710594066
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1699865
1699942
+
Pro
CGG
[ENA]
¡û
Identical group No.245163 (3 seq.)
>W1712039377
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
85208
85131
-
Pro
CGG
[ENA]
¡û
>W11138616
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
269701
269778
+
Pro
CGG
[ENA]
¡û
>W121031622
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
710879
710956
+
Pro
CGG
[ENA]
¡û
Identical group No.245514 (3 seq.)
>W1711629568
MPPC01000024
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
49224
49301
+
Pro
CGG
[ENA]
¡û
>WENV170717389
LSQX01034008
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
107505
107582
+
Pro
CGG
[ENA]
¢þ
>C10100321
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1380696
1380619
-
Pro
CGG
[Ensembl]
¡û
Identical group No.245582 (6 seq.)
>W141701191
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
57954
57877
-
Pro
CGG
[ENA]
¡û
>W1710629234
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
55911
55834
-
Pro
CGG
[ENA]
¡û
>W1710629277
JPZR01000002
Synergistota
Synergistes jonesii [JPZR]
40467
40390
-
Pro
CGG
[ENA]
¡û
>W1710629320
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
55911
55834
-
Pro
CGG
[ENA]
¡û
>W1710631851
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
128876
128953
+
Pro
CGG
[ENA]
¡û
>W1710631868
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
55910
55833
-
Pro
CGG
[ENA]
¡û
Identical group No.247238 (3 seq.)
>WENV170563351
CZCB01015775
[CZCB] anaerobic digester metagenome; anaerobic digester
1480
1557
+
Pro
CGG
[ENA]
¢þ
>W09126641
ACJX01000214
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
30825
30748
-
Pro
CGG
[ENA]
¡û
>W1710530820
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
142833
142756
-
Pro
CGG
[ENA]
¡û
Identical group No.247397 (4 seq.)
>WENV181229876
OFEK01000107
[OFEK] activated sludge metagenome; Anaerobic digester
95961
96038
+
Pro
CGG
[ENA]
¢þ
>WENV170678633
LDZU01003472
[LDZU] terrestrial metagenome; oil reservoir sample SB2
86
9
-
Pro
CGG
[ENA]
¢þ
>W1610614171
LGGV01000097
Synergistota
Synergistales bacterium 58_81 [LGGV]
86
9
-
Pro
CGG
[ENA]
¡û
>W1710735254
LGGV01000097
Synergistota
Synergistales bacterium 58_81 [LGGV]
86
9
-
Pro
CGG
[ENA]
¡û
Identical group No.247408 (6 seq.)
>WENV170677170
LDZT01003316
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5966
6043
+
Pro
CGG
[ENA]
¢þ
>WENV170679056
LDZU01006818
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5147
5224
+
Pro
CGG
[ENA]
¢þ
>W1610613631
LGGB01000068
Synergistota
Synergistales bacterium 53_16 [LGGB]
5966
6043
+
Pro
CGG
[ENA]
¡û
>W1610614503
LGHG01000069
Synergistota
Synergistales bacterium 54_9 [LGHG]
5147
5224
+
Pro
CGG
[ENA]
¡û
>W1710734803
LGGB01000068
Synergistota
Synergistales bacterium 53_16 [LGGB]
5966
6043
+
Pro
CGG
[ENA]
¡û
>W1710735484
LGHG01000069
Synergistota
Synergistales bacterium 54_9 [LGHG]
5147
5224
+
Pro
CGG
[ENA]
¡û
Identical group No.249336 (6 seq.)
>WENV181898783
OGXT01014318
[OGXT] human gut metagenome; faeces
2540
2463
-
Pro
CGG
[ENA]
¢þ
>WENV181908877
OGYB01001509
[OGYB] human gut metagenome; faeces
438
515
+
Pro
CGG
[ENA]
¢þ
>WENV182221078
OHQS01043708
[OHQS] human gut metagenome; feces
110
33
-
Pro
CGG
[ENA]
¢þ
>W141452018
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1191643
1191720
+
Pro
CGG
[ENA]
¡û
>W121000475
ACUH01000042
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
376
453
+
Pro
CGG
[ENA]
¡û
>W121000480
ACUH01000046
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
2160
2237
+
Pro
CGG
[ENA]
¡û
Identical group No.252594 (2 seq.)
>WENV181081812
OEAS01396141
[OEAS] human metagenome; G_DNA_Supragingival plaque
111
34
-
Pro
CGG
[ENA]
¢þ
>C161104029
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1454289
1454366
+
Pro
CGG
-
¡û
Identical group No.253189 (11 seq.)
>W1711744482
MUHX01000002
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
615
692
+
Pro
CGG
[ENA]
¡û
>WENV180996243
ODVR01175332
[ODVR] human metagenome; G_DNA_Stool
81
4
-
Pro
CGG
[ENA]
¢þ
>W141146868
AWWC01000022
Synergistota
Jonquetella sp. BV3C21 [AWWC]
38776
38853
+
Pro
CGG
[ENA]
¡û
>WENV181638902
OGNC01029239
[OGNC] metagenome; Human gut stool
242
319
+
Pro
CGG
[ENA]
¢þ
>WENV181989156
OHAO01003744
[OHAO] human gut metagenome; faeces
448
525
+
Pro
CGG
[ENA]
¢þ
>WENV183717498
PDWJ01001005
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3992
4069
+
Pro
CGG
[ENA]
¢þ
>WENV183763980
PPYE01311400
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
22133
22056
-
Pro
CGG
[ENA]
¢þ
>W09132968
ACOO02000021
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
15307
15230
-
Pro
CGG
[ENA]
¡û
>W10113052
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
27622
27545
-
Pro
CGG
[ENA]
¡û
>W11116279
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
27622
27545
-
Pro
CGG
[ENA]
¡û
>W121017504
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
255245
255168
-
Pro
CGG
[ENA]
¡û
Identical group No.256033 (5 seq.)
>W1711137637
LVBQ01000153
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
284
361
+
Pro
CGG
[ENA]
¡û
>WENV180097109
MTBK01168895
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
293
216
-
Pro
CGG
[ENA]
¢þ
>WENV170686865
LFRM01167911
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1658
1735
+
Pro
CGG
[ENA]
¢þ
>WENV170716501
LSQX01001371
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6951
6874
-
Pro
CGG
[ENA]
¢þ
>W1610948757
LVBQ01000153
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
284
361
+
Pro
CGG
[ENA]
¡û
Identical group No.256715 (2 seq.)
>W131157331
AQRZ01000048
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
5846
5769
-
Pro
CGG
[ENA]
¡û
>WENV170007015
AMWB02076542
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
537
614
+
Pro
CGG
[ENA]
¢þ
Identical group No.262116 (2 seq.)
>WENV170657224
JTFO01105029
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
425
348
-
Pro
CGG
[ENA]
¢þ
>W09108903
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
27142
27065
-
Pro
CGG
[ENA]
¡û
Identical group No.265314 (2 seq.)
>W141278973
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
987880
987803
-
Pro
CGG
[ENA]
¡û
>W1610945970
LUYG01000018
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
1436
1359
-
Pro
CGG
[ENA]
¡û
Identical group No.266497 (1 seq.)
>W1710608692
FXBB01000012
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
52899
52976
+
Pro
CGG
[ENA]
¡û
Identical group No.268667 (1 seq.)
>C121005697
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1279855
1279778
-
Pro
CGG
[Ensembl]
¡û
Identical group No.268778 (1 seq.)
>W141278990
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
851084
851161
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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