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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114006 (13 seq.)
>WENV180346330
OBLN01062886
[OBLN] sediment metagenome; sediment
133
219
+
Leu
GAG
[ENA]
¢þ
>WENV181230013
OFEK01000180
[OFEK] activated sludge metagenome; Anaerobic digester
76314
76400
+
Leu
GAG
[ENA]
¢þ
>WENV170678368
LDZT01014136
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2117
2031
-
Leu
GAG
[ENA]
¢þ
>WENV170678634
LDZU01003493
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2856
2770
-
Leu
GAG
[ENA]
¢þ
>WENV170967021
MTKW01000121
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
42422
42508
+
Leu
GAG
[ENA]
¢þ
>WENV170971669
MTKX01009418
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7284
7370
+
Leu
GAG
[ENA]
¢þ
>WENV170972926
MTKY01004984
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
923
837
-
Leu
GAG
[ENA]
¢þ
>WENV170975237
MTKY01098707
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
413
327
-
Leu
GAG
[ENA]
¢þ
>WENV170976853
MTKZ01013284
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
122058
121972
-
Leu
GAG
[ENA]
¢þ
>W1610613720
LGGE01000129
Synergistota
Synergistales bacterium 57_84 [LGGE]
2117
2031
-
Leu
GAG
[ENA]
¡û
>W1610614172
LGGV01000118
Synergistota
Synergistales bacterium 58_81 [LGGV]
2856
2770
-
Leu
GAG
[ENA]
¡û
>W1710734873
LGGE01000129
Synergistota
Synergistales bacterium 57_84 [LGGE]
2117
2031
-
Leu
GAG
[ENA]
¡û
>W1710735255
LGGV01000118
Synergistota
Synergistales bacterium 58_81 [LGGV]
2856
2770
-
Leu
GAG
[ENA]
¡û
Identical group No.122512 (4 seq.)
>WENV170676982
LDZS01003852
[LDZS] terrestrial metagenome; oil reservoir sample K3
4011
3925
-
Leu
GAG
[ENA]
¢þ
>C121005695
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1489865
1489779
-
Leu
GAG
[Ensembl]
¡û
>W1610613344
LGFS01000014
Synergistota
Thermovirga lienii [LGFS]
4011
3925
-
Leu
GAG
[ENA]
¡û
>W1710734551
LGFS01000014
Synergistota
Thermovirga lienii [LGFS]
4011
3925
-
Leu
GAG
[ENA]
¡û
Identical group No.122523 (7 seq.)
>WENV180346750
OBLN01265123
[OBLN] sediment metagenome; sediment
219
133
-
Leu
GAG
[ENA]
¢þ
>WENV170677151
LDZT01003254
[LDZT] terrestrial metagenome; oil reservoir sample SB1
24418
24332
-
Leu
GAG
[ENA]
¢þ
>WENV170679030
LDZU01006751
[LDZU] terrestrial metagenome; oil reservoir sample SB2
11644
11558
-
Leu
GAG
[ENA]
¢þ
>W1610613612
LGGB01000006
Synergistota
Synergistales bacterium 53_16 [LGGB]
24418
24332
-
Leu
GAG
[ENA]
¡û
>W1610614477
LGHG01000002
Synergistota
Synergistales bacterium 54_9 [LGHG]
11644
11558
-
Leu
GAG
[ENA]
¡û
>W1710734784
LGGB01000006
Synergistota
Synergistales bacterium 53_16 [LGGB]
24418
24332
-
Leu
GAG
[ENA]
¡û
>W1710735458
LGHG01000002
Synergistota
Synergistales bacterium 54_9 [LGHG]
11644
11558
-
Leu
GAG
[ENA]
¡û
Identical group No.181782 (4 seq.)
>WENV170676928
LDZS01003215
[LDZS] terrestrial metagenome; oil reservoir sample K3
8187
8271
+
Leu
GAG
[ENA]
¢þ
>WENV170970225
MTKW01057650
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
930
846
-
Leu
GAG
[ENA]
¢þ
>W1610613296
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
8187
8271
+
Leu
GAG
[ENA]
¡û
>W1710734503
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
8187
8271
+
Leu
GAG
[ENA]
¡û
Identical group No.183984 (18 seq.)
>W1712039368
NFJQ01000006
Synergistota
Cloacibacillus sp. An23 [NFJQ]
16679
16763
+
Leu
GAG
[ENA]
¡û
>C171050523
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
265833
265917
+
Leu
GAG
-
¡û
>WENV181865468
OGWU01029759
[OGWU] human gut metagenome; faeces
557
473
-
Leu
GAG
[ENA]
¢þ
>WENV181908576
OGYB01000117
[OGYB] human gut metagenome; faeces
23150
23066
-
Leu
GAG
[ENA]
¢þ
>WENV182031190
OHCS01004864
[OHCS] human gut metagenome; feces
121
37
-
Leu
GAG
[ENA]
¢þ
>WENV182172670
OHMY01029559
[OHMY] human gut metagenome; feces
851
935
+
Leu
GAG
[ENA]
¢þ
>WENV182212711
OHQG01004515
[OHQG] human gut metagenome; feces
3682
3766
+
Leu
GAG
[ENA]
¢þ
>WENV182215803
OHQM01002777
[OHQM] human gut metagenome; feces
5397
5481
+
Leu
GAG
[ENA]
¢þ
>WENV182274083
OHUJ01033274
[OHUJ] human gut metagenome; feces
426
342
-
Leu
GAG
[ENA]
¢þ
>WENV182537420
OIXH01007269
[OIXH] human gut metagenome; faeces
1333
1417
+
Leu
GAG
[ENA]
¢þ
>W141452008
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
338390
338474
+
Leu
GAG
[ENA]
¡û
>W141701208
JMKI01000036
Synergistota
Synergistes jonesii [JMKI]
189135
189219
+
Leu
GAG
[ENA]
¡û
>W121000457
ACUH01000005
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
125099
125183
+
Leu
GAG
[ENA]
¡û
>W1710629249
JPZQ01000043
Synergistota
Synergistes jonesii [JPZQ]
37349
37433
+
Leu
GAG
[ENA]
¡û
>W1710629293
JPZR01000034
Synergistota
Synergistes jonesii [JPZR]
37348
37432
+
Leu
GAG
[ENA]
¡û
>W1710629335
JPZS01000036
Synergistota
Synergistes jonesii [JPZS]
37360
37444
+
Leu
GAG
[ENA]
¡û
>W1710631836
JQEK01000024
Synergistota
Synergistes jonesii [JQEK]
98909
98993
+
Leu
GAG
[ENA]
¡û
>W1710631883
JQEL01000038
Synergistota
Synergistes jonesii [JQEL]
98897
98981
+
Leu
GAG
[ENA]
¡û
Identical group No.186382 (9 seq.)
>WENV170008221
AMZC01005111
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
577
661
+
Leu
GAG
[ENA]
¢þ
>WENV170561672
CZCA01019841
[CZCA] anaerobic digester metagenome; anaerobic digester
939
855
-
Leu
GAG
[ENA]
¢þ
>WENV170562957
CZCB01008030
[CZCB] anaerobic digester metagenome; anaerobic digester
2165
2249
+
Leu
GAG
[ENA]
¢þ
>WENV170686980
LFRM01171466
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7042
6958
-
Leu
GAG
[ENA]
¢þ
>WENV170689037
LFRM01273734
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
108
192
+
Leu
GAG
[ENA]
¢þ
>WENV170722884
LSQX01247099
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
71
155
+
Leu
GAG
[ENA]
¢þ
>WENV170723807
LSQX01282204
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
33613
33697
+
Leu
GAG
[ENA]
¢þ
>C121008071
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1536409
1536325
-
Leu
GAG
[Ensembl]
¡û
>W1710594065
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1617485
1617569
+
Leu
GAG
[ENA]
¡û
Identical group No.189616 (3 seq.)
>WENV170563897
CZCB01034633
[CZCB] anaerobic digester metagenome; anaerobic digester
1067
1151
+
Leu
GAG
[ENA]
¢þ
>W09126640
ACJX01000214
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
115662
115578
-
Leu
GAG
[ENA]
¡û
>W1710530819
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
227691
227607
-
Leu
GAG
[ENA]
¡û
Identical group No.196811 (1 seq.)
>W11138589
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
865688
865772
+
Leu
GAG
[ENA]
¡û
Identical group No.201504 (1 seq.)
>W131157325
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
22043
21959
-
Leu
GAG
[ENA]
¡û
Identical group No.201659 (5 seq.)
>W1711137617
LVBQ01000031
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
7862
7946
+
Leu
GAG
[ENA]
¡û
>WENV180095184
MTBK01054347
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
266
182
-
Leu
GAG
[ENA]
¢þ
>WENV181311628
OFJB01006124
[OFJB] sludge metagenome; sludge
3012
2928
-
Leu
GAG
[ENA]
¢þ
>WENV170977971
MTKZ01037248
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
874
790
-
Leu
GAG
[ENA]
¢þ
>W1610948737
LVBQ01000031
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
7862
7946
+
Leu
GAG
[ENA]
¡û
Identical group No.210492 (4 seq.)
>WENV181409752
OGCI01000560
[OGCI] hot springs metagenome; Hot spring water
28630
28546
-
Leu
GAG
[ENA]
¢þ
>W09110119
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
114135
114219
+
Leu
GAG
[ENA]
¡û
>C10113003
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1469918
1469834
-
Leu
GAG
[Ensembl]
¡û
>W121031616
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
381978
382062
+
Leu
GAG
[ENA]
¡û
Identical group No.213616 (1 seq.)
>W141278948
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
239386
239302
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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