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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461176 (34 seq.)
>W1711137639
LVBQ01000164
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1723
1798
+
Thr
GGT
[ENA]
¡û
>W1711629561
MPPC01000012
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
20840
20915
+
Thr
GGT
[ENA]
¡û
>WENV180346162
OBLN01033122
[OBLN] sediment metagenome; sediment
709
784
+
Thr
GGT
[ENA]
¢þ
>WENV180735265
ODGZ01125313
[ODGZ] human metagenome; G_DNA_Supragingival plaque
191
266
+
Thr
GGT
[ENA]
¢þ
>WENV180809559
ODJK01024519
[ODJK] human metagenome; G_DNA_Subgingival plaque
970
1045
+
Thr
GGT
[ENA]
¢þ
>WENV180944290
ODUC01012398
[ODUC] human metagenome; G_DNA_Supragingival plaque
313
238
-
Thr
GGT
[ENA]
¢þ
>WENV180976598
ODUY01160359
[ODUY] human metagenome; G_DNA_Supragingival plaque
164
239
+
Thr
GGT
[ENA]
¢þ
>WENV180981557
ODVE01030980
[ODVE] human metagenome; G_DNA_Supragingival plaque
715
790
+
Thr
GGT
[ENA]
¢þ
>WENV181009739
ODWE01179418
[ODWE] human metagenome; G_DNA_Supragingival plaque
189
114
-
Thr
GGT
[ENA]
¢þ
>WENV181050046
ODYD01005193
[ODYD] human metagenome; G_DNA_Supragingival plaque
2308
2383
+
Thr
GGT
[ENA]
¢þ
>WENV181076505
OEAP01006295
[OEAP] human metagenome; G_DNA_Supragingival plaque
2008
2083
+
Thr
GGT
[ENA]
¢þ
>WENV181182502
OEJV01013235
[OEJV] human metagenome; G_DNA_Supragingival plaque
112
37
-
Thr
GGT
[ENA]
¢þ
>WENV181230642
OFEK01001989
[OFEK] activated sludge metagenome; Anaerobic digester
11827
11902
+
Thr
GGT
[ENA]
¢þ
>WENV181409947
OGCI01000973
[OGCI] hot springs metagenome; Hot spring water
27132
27207
+
Thr
GGT
[ENA]
¢þ
>W141278939
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
463588
463513
-
Thr
GGT
[ENA]
¡û
>W141279024
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
103429
103354
-
Thr
GGT
[ENA]
¡û
>WENV183514347
OMKS01016815
[OMKS] sediment metagenome; hot spring sediment
1834
1909
+
Thr
GGT
[ENA]
¢þ
>WENV170656757
JTFO01040643
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
507
432
-
Thr
GGT
[ENA]
¢þ
>WENV170678355
LDZT01014033
[LDZT] terrestrial metagenome; oil reservoir sample SB1
8705
8780
+
Thr
GGT
[ENA]
¢þ
>WENV170678627
LDZU01003414
[LDZU] terrestrial metagenome; oil reservoir sample SB2
267
192
-
Thr
GGT
[ENA]
¢þ
>WENV170725811
LSQX01357631
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5077
5002
-
Thr
GGT
[ENA]
¢þ
>WENV170967249
MTKW01000575
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
20309
20384
+
Thr
GGT
[ENA]
¢þ
>WENV170972554
MTKX01034746
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
244
169
-
Thr
GGT
[ENA]
¢þ
>WENV170974564
MTKY01065776
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
905
980
+
Thr
GGT
[ENA]
¢þ
>WENV170976880
MTKZ01013685
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6939
7014
+
Thr
GGT
[ENA]
¢þ
>W09110158
ABUW01000009
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
1982
1907
-
Thr
GGT
[ENA]
¡û
>C10100294
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
325516
325591
+
Thr
GGT
[Ensembl]
¡û
>C10112995
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1585433
1585358
-
Thr
GGT
[Ensembl]
¡û
>W121031608
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
285717
285792
+
Thr
GGT
[ENA]
¡û
>W1610613707
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8705
8780
+
Thr
GGT
[ENA]
¡û
>W1610614165
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
267
192
-
Thr
GGT
[ENA]
¡û
>W1610948759
LVBQ01000164
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1723
1798
+
Thr
GGT
[ENA]
¡û
>W1710734860
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8705
8780
+
Thr
GGT
[ENA]
¡û
>W1710735248
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
267
192
-
Thr
GGT
[ENA]
¡û
Identical group No.473788 (17 seq.)
>W1712039366
NFJQ01000005
Synergistota
Cloacibacillus sp. An23 [NFJQ]
230427
230502
+
Thr
GGT
[ENA]
¡û
>C171050526
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
570234
570309
+
Thr
GGT
-
¡û
>WENV180095987
MTBK01100724
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
262
337
+
Thr
GGT
[ENA]
¢þ
>WENV181081336
OEAS01179642
[OEAS] human metagenome; G_DNA_Supragingival plaque
244
319
+
Thr
GGT
[ENA]
¢þ
>WENV181091612
OEBC01058872
[OEBC] human metagenome; G_DNA_Supragingival plaque
683
758
+
Thr
GGT
[ENA]
¢þ
>WENV181642086
OGNF01069544
[OGNF] metagenome; Human gut stool
202
277
+
Thr
GGT
[ENA]
¢þ
>WENV181910503
OGYC01014341
[OGYC] human gut metagenome; faeces
1481
1406
-
Thr
GGT
[ENA]
¢þ
>WENV181915062
OGYF01002634
[OGYF] human gut metagenome; faeces
1083
1158
+
Thr
GGT
[ENA]
¢þ
>WENV182031044
OHCS01001668
[OHCS] human gut metagenome; feces
5666
5591
-
Thr
GGT
[ENA]
¢þ
>WENV182180680
OHNO01006488
[OHNO] human gut metagenome; feces
1450
1525
+
Thr
GGT
[ENA]
¢þ
>WENV182215852
OHQM01004573
[OHQM] human gut metagenome; feces
700
775
+
Thr
GGT
[ENA]
¢þ
>WENV183713893
PDWI01158257
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1432
1357
-
Thr
GGT
[ENA]
¢þ
>WENV170656248
JTFO01006440
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
567
492
-
Thr
GGT
[ENA]
¢þ
>WENV170717284
LSQX01030192
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8045
7970
-
Thr
GGT
[ENA]
¢þ
>W11138626
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
648873
648798
-
Thr
GGT
[ENA]
¡û
>C121005668
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
470896
470971
+
Thr
GGT
[Ensembl]
¡û
>W1710608718
FXBB01000049
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
14034
14109
+
Thr
GGT
[ENA]
¡û
Identical group No.486063 (10 seq.)
>WENV170563755
CZCB01028390
[CZCB] anaerobic digester metagenome; anaerobic digester
5509
5434
-
Thr
GGT
[ENA]
¢þ
>WENV170676915
LDZS01003195
[LDZS] terrestrial metagenome; oil reservoir sample K3
26028
26103
+
Thr
GGT
[ENA]
¢þ
>WENV170686671
LFRM01158404
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
327
252
-
Thr
GGT
[ENA]
¢þ
>WENV170688472
LFRM01247193
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3057
3132
+
Thr
GGT
[ENA]
¢þ
>W09126634
ACJX01000177
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
661
586
-
Thr
GGT
[ENA]
¡û
>C121008044
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
202466
202541
+
Thr
GGT
[Ensembl]
¡û
>W1610613283
LGFQ01000015
Synergistota
Synergistales bacterium 54_24 [LGFQ]
26028
26103
+
Thr
GGT
[ENA]
¡û
>W1710530846
FNPD01000012
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
17188
17113
-
Thr
GGT
[ENA]
¡û
>W1710594073
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
874899
874824
-
Thr
GGT
[ENA]
¡û
>W1710734490
LGFQ01000015
Synergistota
Synergistales bacterium 54_24 [LGFQ]
26028
26103
+
Thr
GGT
[ENA]
¡û
Identical group No.491399 (13 seq.)
>WENV181908664
OGYB01000268
[OGYB] human gut metagenome; faeces
2312
2237
-
Thr
GGT
[ENA]
¢þ
>WENV182143719
OHKV01016682
[OHKV] human gut metagenome; feces
669
744
+
Thr
GGT
[ENA]
¢þ
>WENV182172571
OHMY01017753
[OHMY] human gut metagenome; feces
1209
1284
+
Thr
GGT
[ENA]
¢þ
>WENV170657062
JTFO01074398
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
197
122
-
Thr
GGT
[ENA]
¢þ
>W141452011
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
529877
529952
+
Thr
GGT
[ENA]
¡û
>W09108937
ABTR01000025
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
16283
16358
+
Thr
GGT
[ENA]
¡û
>W141701203
JMKI01000034
Synergistota
Synergistes jonesii [JMKI]
2203
2128
-
Thr
GGT
[ENA]
¡û
>W121000461
ACUH01000007
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
96019
96094
+
Thr
GGT
[ENA]
¡û
>W1710629244
JPZQ01000034
Synergistota
Synergistes jonesii [JPZQ]
1644
1569
-
Thr
GGT
[ENA]
¡û
>W1710629288
JPZR01000026
Synergistota
Synergistes jonesii [JPZR]
1645
1570
-
Thr
GGT
[ENA]
¡û
>W1710629330
JPZS01000028
Synergistota
Synergistes jonesii [JPZS]
1644
1569
-
Thr
GGT
[ENA]
¡û
>W1710631823
JQEK01000018
Synergistota
Synergistes jonesii [JQEK]
1644
1569
-
Thr
GGT
[ENA]
¡û
>W1710631878
JQEL01000031
Synergistota
Synergistes jonesii [JQEL]
1644
1569
-
Thr
GGT
[ENA]
¡û
Identical group No.530742 (7 seq.)
>W1711137567
LVBO01000316
Synergistota
Synergistales bacterium Syner_01 [LVBO]
2959
2884
-
Thr
GGT
[ENA]
¡û
>W131157330
AQRZ01000046
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
18430
18505
+
Thr
GGT
[ENA]
¡û
>WENV180731713
ODGW01007823
[ODGW] human metagenome; G_DNA_Supragingival plaque
1143
1068
-
Thr
GGT
[ENA]
¢þ
>WENV180751397
ODHS01048871
[ODHS] human metagenome; G_DNA_Supragingival plaque
111
186
+
Thr
GGT
[ENA]
¢þ
>WENV180797256
ODJB01041433
[ODJB] human metagenome; G_DNA_Supragingival plaque
471
546
+
Thr
GGT
[ENA]
¢þ
>WENV181312203
OFJB01055015
[OFJB] sludge metagenome; sludge
561
486
-
Thr
GGT
[ENA]
¢þ
>W1610948687
LVBO01000316
Synergistota
Synergistales bacterium Syner_01 [LVBO]
2959
2884
-
Thr
GGT
[ENA]
¡û
Identical group No.541234 (1 seq.)
>W11300461
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13059
12984
-
Thr
GGT
[ENA]
¡û
Identical group No.553402 (3 seq.)
>W141146836
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
39041
39116
+
Thr
GGT
[ENA]
¡û
>W09132990
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42397
42472
+
Thr
GGT
[ENA]
¡û
>W121017470
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141814
141889
+
Thr
GGT
[ENA]
¡û
Identical group No.603106 (2 seq.)
>W1711137602
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23448
23373
-
Thr
GGT
[ENA]
¡û
>W1610948722
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23448
23373
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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