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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156217 (13 seq.)
>C171050524
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
564234
564319
+
Tyr
GTA
-
¡û
>C171050525
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
570101
570186
+
Tyr
GTA
-
¡û
>WENV181637743
OGNB01035962
[OGNB] metagenome; Human gut stool
607
522
-
Tyr
GTA
[ENA]
¢þ
>WENV181642085
OGNF01069544
[OGNF] metagenome; Human gut stool
69
154
+
Tyr
GTA
[ENA]
¢þ
>WENV181910502
OGYC01014341
[OGYC] human gut metagenome; faeces
1614
1529
-
Tyr
GTA
[ENA]
¢þ
>WENV181915061
OGYF01002634
[OGYF] human gut metagenome; faeces
950
1035
+
Tyr
GTA
[ENA]
¢þ
>WENV181915235
OGYF01004181
[OGYF] human gut metagenome; faeces
5741
5656
-
Tyr
GTA
[ENA]
¢þ
>WENV182031043
OHCS01001668
[OHCS] human gut metagenome; feces
5799
5714
-
Tyr
GTA
[ENA]
¢þ
>WENV182180604
OHNO01003846
[OHNO] human gut metagenome; feces
930
1015
+
Tyr
GTA
[ENA]
¢þ
>WENV182180679
OHNO01006488
[OHNO] human gut metagenome; feces
1317
1402
+
Tyr
GTA
[ENA]
¢þ
>WENV182212922
OHQG01017514
[OHQG] human gut metagenome; feces
623
538
-
Tyr
GTA
[ENA]
¢þ
>WENV182215851
OHQM01004573
[OHQM] human gut metagenome; feces
567
652
+
Tyr
GTA
[ENA]
¢þ
>WENV182881577
OKSA01016771
[OKSA] human gut metagenome; faeces
233
148
-
Tyr
GTA
[ENA]
¢þ
Identical group No.157752 (2 seq.)
>C121008043
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
202376
202461
+
Tyr
GTA
[Ensembl]
¡û
>W1710594072
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
874989
874904
-
Tyr
GTA
[ENA]
¡û
Identical group No.158022 (2 seq.)
>W1712039365
NFJQ01000005
Synergistota
Cloacibacillus sp. An23 [NFJQ]
230302
230387
+
Tyr
GTA
[ENA]
¡û
>WENV180224118
OBBI01065932
[OBBI] human gut metagenome; human gut
17
102
+
Tyr
GTA
[ENA]
¢þ
Identical group No.158381 (3 seq.)
>W1711629560
MPPC01000012
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
20738
20823
+
Tyr
GTA
[ENA]
¡û
>WENV170725810
LSQX01357631
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5179
5094
-
Tyr
GTA
[ENA]
¢þ
>C10100293
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
325414
325499
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.158485 (6 seq.)
>W141701194
JMKI01000016
Synergistota
Synergistes jonesii [JMKI]
2633
2718
+
Tyr
GTA
[ENA]
¡û
>W1710629237
JPZQ01000021
Synergistota
Synergistes jonesii [JPZQ]
1759
1844
+
Tyr
GTA
[ENA]
¡û
>W1710629281
JPZR01000016
Synergistota
Synergistes jonesii [JPZR]
1759
1844
+
Tyr
GTA
[ENA]
¡û
>W1710629323
JPZS01000016
Synergistota
Synergistes jonesii [JPZS]
1764
1849
+
Tyr
GTA
[ENA]
¡û
>W1710631840
JQEK01000044
Synergistota
Synergistes jonesii [JQEK]
12175
12090
-
Tyr
GTA
[ENA]
¡û
>W1710631871
JQEL01000019
Synergistota
Synergistes jonesii [JQEL]
1759
1844
+
Tyr
GTA
[ENA]
¡û
Identical group No.158486 (18 seq.)
>WENV181908662
OGYB01000268
[OGYB] human gut metagenome; faeces
3978
3893
-
Tyr
GTA
[ENA]
¢þ
>WENV181908663
OGYB01000268
[OGYB] human gut metagenome; faeces
2441
2356
-
Tyr
GTA
[ENA]
¢þ
>WENV182143718
OHKV01016682
[OHKV] human gut metagenome; feces
540
625
+
Tyr
GTA
[ENA]
¢þ
>WENV182172570
OHMY01017753
[OHMY] human gut metagenome; feces
1080
1165
+
Tyr
GTA
[ENA]
¢þ
>WENV182220861
OHQS01011477
[OHQS] human gut metagenome; feces
182
97
-
Tyr
GTA
[ENA]
¢þ
>WENV182274756
OHUK01009012
[OHUK] human gut metagenome; feces
546
631
+
Tyr
GTA
[ENA]
¢þ
>WENV182537760
OIXH01016974
[OIXH] human gut metagenome; faeces
177
92
-
Tyr
GTA
[ENA]
¢þ
>WENV183039256
OLGB01004700
[OLGB] human gut metagenome; faeces
9769
9854
+
Tyr
GTA
[ENA]
¢þ
>W141452009
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
526966
527051
+
Tyr
GTA
[ENA]
¡û
>W141452010
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
529748
529833
+
Tyr
GTA
[ENA]
¡û
>W141701202
JMKI01000034
Synergistota
Synergistes jonesii [JMKI]
2311
2226
-
Tyr
GTA
[ENA]
¡û
>W121000459
ACUH01000007
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
94353
94438
+
Tyr
GTA
[ENA]
¡û
>W121000460
ACUH01000007
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
95890
95975
+
Tyr
GTA
[ENA]
¡û
>W1710629243
JPZQ01000034
Synergistota
Synergistes jonesii [JPZQ]
1752
1667
-
Tyr
GTA
[ENA]
¡û
>W1710629287
JPZR01000026
Synergistota
Synergistes jonesii [JPZR]
1753
1668
-
Tyr
GTA
[ENA]
¡û
>W1710629329
JPZS01000028
Synergistota
Synergistes jonesii [JPZS]
1752
1667
-
Tyr
GTA
[ENA]
¡û
>W1710631822
JQEK01000018
Synergistota
Synergistes jonesii [JQEK]
1752
1667
-
Tyr
GTA
[ENA]
¡û
>W1710631877
JQEL01000031
Synergistota
Synergistes jonesii [JQEL]
1752
1667
-
Tyr
GTA
[ENA]
¡û
Identical group No.160048 (3 seq.)
>WENV170676914
LDZS01003195
[LDZS] terrestrial metagenome; oil reservoir sample K3
25933
26018
+
Tyr
GTA
[ENA]
¢þ
>W1610613282
LGFQ01000015
Synergistota
Synergistales bacterium 54_24 [LGFQ]
25933
26018
+
Tyr
GTA
[ENA]
¡û
>W1710734489
LGFQ01000015
Synergistota
Synergistales bacterium 54_24 [LGFQ]
25933
26018
+
Tyr
GTA
[ENA]
¡û
Identical group No.164844 (5 seq.)
>W1711744500
MUHX01000015
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
43843
43928
+
Tyr
GTA
[ENA]
¡û
>WENV181988990
OHAO01001947
[OHAO] human gut metagenome; faeces
11770
11685
-
Tyr
GTA
[ENA]
¢þ
>WENV183763940
PPYE01311267
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5467
5552
+
Tyr
GTA
[ENA]
¢þ
>W10113029
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13152
13067
-
Tyr
GTA
[ENA]
¡û
>W11116256
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13152
13067
-
Tyr
GTA
[ENA]
¡û
Identical group No.164861 (1 seq.)
>W11138625
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
648969
648884
-
Tyr
GTA
[ENA]
¡û
Identical group No.166472 (3 seq.)
>W141146835
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
38952
39037
+
Tyr
GTA
[ENA]
¡û
>W09132989
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42308
42393
+
Tyr
GTA
[ENA]
¡û
>W121017469
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141725
141810
+
Tyr
GTA
[ENA]
¡û
Identical group No.167248 (3 seq.)
>WENV183713892
PDWI01158257
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1544
1459
-
Tyr
GTA
[ENA]
¢þ
>WENV170656247
JTFO01006440
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
672
587
-
Tyr
GTA
[ENA]
¢þ
>W1710608717
FXBB01000049
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
13928
14013
+
Tyr
GTA
[ENA]
¡û
Identical group No.168053 (2 seq.)
>W131157329
AQRZ01000046
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
18326
18411
+
Tyr
GTA
[ENA]
¡û
>WENV181312202
OFJB01055015
[OFJB] sludge metagenome; sludge
665
580
-
Tyr
GTA
[ENA]
¢þ
Identical group No.169229 (3 seq.)
>W1711137638
LVBQ01000164
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1602
1687
+
Tyr
GTA
[ENA]
¡û
>WENV170656902
JTFO01058880
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
341
426
+
Tyr
GTA
[ENA]
¢þ
>W1610948758
LVBQ01000164
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1602
1687
+
Tyr
GTA
[ENA]
¡û
Identical group No.169275 (2 seq.)
>W09126633
ACJX01000177
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
751
666
-
Tyr
GTA
[ENA]
¡û
>W1710530845
FNPD01000012
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
17278
17193
-
Tyr
GTA
[ENA]
¡û
Identical group No.172852 (2 seq.)
>WENV170657061
JTFO01074398
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
300
215
-
Tyr
GTA
[ENA]
¢þ
>W09108936
ABTR01000025
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
16183
16268
+
Tyr
GTA
[ENA]
¡û
Identical group No.174555 (4 seq.)
>WENV181409946
OGCI01000973
[OGCI] hot springs metagenome; Hot spring water
27035
27120
+
Tyr
GTA
[ENA]
¢þ
>W09110157
ABUW01000009
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
2079
1994
-
Tyr
GTA
[ENA]
¡û
>C10112994
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1585530
1585445
-
Tyr
GTA
[Ensembl]
¡û
>W121031607
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
285621
285706
+
Tyr
GTA
[ENA]
¡û
Identical group No.176617 (1 seq.)
>W141278938
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
463691
463606
-
Tyr
GTA
[ENA]
¡û
Identical group No.178435 (1 seq.)
>C121005667
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
470803
470888
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.178516 (1 seq.)
>W141279023
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
103529
103444
-
Tyr
GTA
[ENA]
¡û
Identical group No.189751 (9 seq.)
>W1711137591
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10296
10380
+
Tyr
GTA
[ENA]
¡û
>WENV181230641
OFEK01001989
[OFEK] activated sludge metagenome; Anaerobic digester
11728
11812
+
Tyr
GTA
[ENA]
¢þ
>WENV170678354
LDZT01014033
[LDZT] terrestrial metagenome; oil reservoir sample SB1
8606
8690
+
Tyr
GTA
[ENA]
¢þ
>WENV170678626
LDZU01003414
[LDZU] terrestrial metagenome; oil reservoir sample SB2
366
282
-
Tyr
GTA
[ENA]
¢þ
>W1610613706
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8606
8690
+
Tyr
GTA
[ENA]
¡û
>W1610614164
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
366
282
-
Tyr
GTA
[ENA]
¡û
>W1610948711
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10296
10380
+
Tyr
GTA
[ENA]
¡û
>W1710734859
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8606
8690
+
Tyr
GTA
[ENA]
¡û
>W1710735247
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
366
282
-
Tyr
GTA
[ENA]
¡û
Identical group No.191349 (5 seq.)
>W1711137601
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23547
23463
-
Tyr
GTA
[ENA]
¡û
>WENV180346161
OBLN01033122
[OBLN] sediment metagenome; sediment
610
694
+
Tyr
GTA
[ENA]
¢þ
>WENV170717283
LSQX01030192
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8144
8060
-
Tyr
GTA
[ENA]
¢þ
>WENV170725831
LSQX01358336
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
375
459
+
Tyr
GTA
[ENA]
¢þ
>W1610948721
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23547
23463
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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