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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTG
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279668 (9 seq.)
>WENV170678347
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
443
519
+
His
GTG
[ENA]
¢þ
>WENV170678610
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
460
536
+
His
GTG
[ENA]
¢þ
>WENV170967228
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
122992
123068
+
His
GTG
[ENA]
¢þ
>WENV170972269
MTKX01025518
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
640
716
+
His
GTG
[ENA]
¢þ
>WENV170978119
MTKZ01041200
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14133
14209
+
His
GTG
[ENA]
¢þ
>W1610613699
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
443
519
+
His
GTG
[ENA]
¡û
>W1610614148
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
460
536
+
His
GTG
[ENA]
¡û
>W1710734852
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
443
519
+
His
GTG
[ENA]
¡û
>W1710735231
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
460
536
+
His
GTG
[ENA]
¡û
Identical group No.290922 (10 seq.)
>C171050545
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1887267
1887343
+
His
GTG
-
¡û
>WENV180274756
OBHE01033770
[OBHE] human gut metagenome; human gut
135
211
+
His
GTG
[ENA]
¢þ
>WENV180544558
OCIQ01033914
[OCIQ] human gut metagenome; human gut
252
176
-
His
GTG
[ENA]
¢þ
>WENV181908456
OGYB01000037
[OGYB] human gut metagenome; faeces
46259
46335
+
His
GTG
[ENA]
¢þ
>WENV181915883
OGYF01023162
[OGYF] human gut metagenome; faeces
466
390
-
His
GTG
[ENA]
¢þ
>WENV182031329
OHCS01010137
[OHCS] human gut metagenome; feces
349
273
-
His
GTG
[ENA]
¢þ
>WENV182180641
OHNO01005017
[OHNO] human gut metagenome; feces
3223
3299
+
His
GTG
[ENA]
¢þ
>WENV182212672
OHQG01003305
[OHQG] human gut metagenome; feces
349
273
-
His
GTG
[ENA]
¢þ
>W141452045
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
518034
517958
-
His
GTG
[ENA]
¡û
>W121000491
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
92874
92950
+
His
GTG
[ENA]
¡û
Identical group No.302268 (2 seq.)
>C121008060
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
697888
697964
+
His
GTG
[Ensembl]
¡û
>W1710594089
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
376209
376133
-
His
GTG
[ENA]
¡û
Identical group No.304071 (1 seq.)
>W1712039382
NFJQ01000010
Synergistota
Cloacibacillus sp. An23 [NFJQ]
67645
67569
-
His
GTG
[ENA]
¡û
Identical group No.306792 (4 seq.)
>W1711629554
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
237347
237423
+
His
GTG
[ENA]
¡û
>W141279001
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1222951
1223027
+
His
GTG
[ENA]
¡û
>WENV170719195
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
277087
277163
+
His
GTG
[ENA]
¢þ
>C10100332
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
986545
986469
-
His
GTG
[Ensembl]
¡û
Identical group No.307536 (6 seq.)
>W141701220
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
18293
18217
-
His
GTG
[ENA]
¡û
>W1710629261
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
17463
17387
-
His
GTG
[ENA]
¡û
>W1710629302
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
17466
17390
-
His
GTG
[ENA]
¡û
>W1710629344
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
17463
17387
-
His
GTG
[ENA]
¡û
>W1710631830
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
17464
17388
-
His
GTG
[ENA]
¡û
>W1710631895
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
17464
17388
-
His
GTG
[ENA]
¡û
Identical group No.315333 (7 seq.)
>WENV183516426
OMKS01177328
[OMKS] sediment metagenome; hot spring sediment
274
198
-
His
GTG
[ENA]
¢þ
>WENV170677159
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
17992
18068
+
His
GTG
[ENA]
¢þ
>WENV170679048
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8079
8155
+
His
GTG
[ENA]
¢þ
>W1610613620
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17992
18068
+
His
GTG
[ENA]
¡û
>W1610614495
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8079
8155
+
His
GTG
[ENA]
¡û
>W1710734792
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17992
18068
+
His
GTG
[ENA]
¡û
>W1710735476
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8079
8155
+
His
GTG
[ENA]
¡û
Identical group No.317761 (6 seq.)
>WENV170563527
CZCB01020574
[CZCB] anaerobic digester metagenome; anaerobic digester
1615
1691
+
His
GTG
[ENA]
¢þ
>WENV170676989
LDZS01004092
[LDZS] terrestrial metagenome; oil reservoir sample K3
4
80
+
His
GTG
[ENA]
¢þ
>W09126610
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
11189
11113
-
His
GTG
[ENA]
¡û
>W1610613351
LGFS01000254
Synergistota
Thermovirga lienii [LGFS]
4
80
+
His
GTG
[ENA]
¡û
>W1710530838
FNPD01000009
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
90445
90369
-
His
GTG
[ENA]
¡û
>W1710734558
LGFS01000254
Synergistota
Thermovirga lienii [LGFS]
4
80
+
His
GTG
[ENA]
¡û
Identical group No.318589 (3 seq.)
>WENV170676922
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
19394
19318
-
His
GTG
[ENA]
¢þ
>W1610613290
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
19394
19318
-
His
GTG
[ENA]
¡û
>W1710734497
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
19394
19318
-
His
GTG
[ENA]
¡û
Identical group No.318593 (4 seq.)
>WENV170676976
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
7399
7323
-
His
GTG
[ENA]
¢þ
>C121005707
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1130970
1130894
-
His
GTG
[Ensembl]
¡û
>W1610613338
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7399
7323
-
His
GTG
[ENA]
¡û
>W1710734545
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7399
7323
-
His
GTG
[ENA]
¡û
Identical group No.345106 (6 seq.)
>W1711744494
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
58826
58902
+
His
GTG
[ENA]
¡û
>WENV181639038
OGNC01071713
[OGNC] metagenome; Human gut stool
503
427
-
His
GTG
[ENA]
¢þ
>WENV183419766
OMAZ01035533
[OMAZ] human gut metagenome; feces
67
143
+
His
GTG
[ENA]
¢þ
>WENV183763966
PPYE01311358
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
29130
29206
+
His
GTG
[ENA]
¢þ
>W10113013
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
441
517
+
His
GTG
[ENA]
¡û
>W11116240
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
441
517
+
His
GTG
[ENA]
¡û
Identical group No.349176 (2 seq.)
>WENV181081797
OEAS01387852
[OEAS] human metagenome; G_DNA_Supragingival plaque
232
156
-
His
GTG
[ENA]
¢þ
>C161104043
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1116651
1116575
-
His
GTG
-
¡û
Identical group No.352499 (1 seq.)
>W11138611
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83396
83472
+
His
GTG
[ENA]
¡û
Identical group No.363252 (3 seq.)
>W141146864
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15110
15186
+
His
GTG
[ENA]
¡û
>W09132973
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14292
14368
+
His
GTG
[ENA]
¡û
>W121017496
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310853
310929
+
His
GTG
[ENA]
¡û
Identical group No.368304 (3 seq.)
>WENV183710580
PDWI01049562
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1696
1620
-
His
GTG
[ENA]
¢þ
>WENV183717201
PDWJ01000566
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11383
11307
-
His
GTG
[ENA]
¢þ
>W09108915
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
123141
123217
+
His
GTG
[ENA]
¡û
Identical group No.417200 (4 seq.)
>WENV181409409
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38636
38560
-
His
GTG
[ENA]
¢þ
>W09110136
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
76003
76079
+
His
GTG
[ENA]
¡û
>C10112980
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879624
879700
+
His
GTG
[Ensembl]
¡û
>W121031632
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865832
865908
+
His
GTG
[ENA]
¡û
Identical group No.429601 (1 seq.)
>W1710608682
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100625
100549
-
His
GTG
[ENA]
¡û
Identical group No.430982 (1 seq.)
>W141278957
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428314
428390
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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