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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TAG
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121689 (7 seq.)
>WENV183515365
OMKS01059376
[OMKS] sediment metagenome; hot spring sediment
1227
1141
-
Leu
TAG
[ENA]
¢þ
>WENV170677163
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
18390
18476
+
Leu
TAG
[ENA]
¢þ
>WENV170679052
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8477
8563
+
Leu
TAG
[ENA]
¢þ
>W1610613624
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
18390
18476
+
Leu
TAG
[ENA]
¡û
>W1610614499
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8477
8563
+
Leu
TAG
[ENA]
¡û
>W1710734796
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
18390
18476
+
Leu
TAG
[ENA]
¡û
>W1710735480
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8477
8563
+
Leu
TAG
[ENA]
¡û
Identical group No.160053 (6 seq.)
>WENV170678351
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
829
914
+
Leu
TAG
[ENA]
¢þ
>WENV170678614
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
846
931
+
Leu
TAG
[ENA]
¢þ
>W1610613703
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
829
914
+
Leu
TAG
[ENA]
¡û
>W1610614152
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
846
931
+
Leu
TAG
[ENA]
¡û
>W1710734856
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
829
914
+
Leu
TAG
[ENA]
¡û
>W1710735235
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
846
931
+
Leu
TAG
[ENA]
¡û
Identical group No.176397 (1 seq.)
>W1710608684
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100416
100331
-
Leu
TAG
[ENA]
¡û
Identical group No.187421 (3 seq.)
>W1711629557
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
242802
242886
+
Leu
TAG
[ENA]
¡û
>WENV170719198
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
282542
282626
+
Leu
TAG
[ENA]
¢þ
>C10100335
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
981090
981006
-
Leu
TAG
[Ensembl]
¡û
Identical group No.189747 (3 seq.)
>WENV170676925
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
18904
18820
-
Leu
TAG
[ENA]
¢þ
>W1610613293
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
18904
18820
-
Leu
TAG
[ENA]
¡û
>W1710734500
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
18904
18820
-
Leu
TAG
[ENA]
¡û
Identical group No.189748 (4 seq.)
>WENV170676980
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
6936
6852
-
Leu
TAG
[ENA]
¢þ
>C121005711
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1130507
1130423
-
Leu
TAG
[Ensembl]
¡û
>W1610613342
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
6936
6852
-
Leu
TAG
[ENA]
¡û
>W1710734549
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
6936
6852
-
Leu
TAG
[ENA]
¡û
Identical group No.196778 (5 seq.)
>WENV181618896
OGMC01026654
[OGMC] metagenome; Human gut stool
645
561
-
Leu
TAG
[ENA]
¢þ
>WENV181989627
OHAO01021184
[OHAO] human gut metagenome; faeces
160
244
+
Leu
TAG
[ENA]
¢þ
>WENV183763873
PPYE01311154
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1109
1193
+
Leu
TAG
[ENA]
¢þ
>W10113006
ADFP01000001
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
105
189
+
Leu
TAG
[ENA]
¡û
>W11116233
ADFP01000001
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
105
189
+
Leu
TAG
[ENA]
¡û
Identical group No.196812 (1 seq.)
>W11138614
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83692
83776
+
Leu
TAG
[ENA]
¡û
Identical group No.211948 (1 seq.)
>W09108918
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
123428
123512
+
Leu
TAG
[ENA]
¡û
Identical group No.215676 (1 seq.)
>W1711744496
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
59457
59541
+
Leu
TAG
[ENA]
¡û
Identical group No.215953 (1 seq.)
>W141279005
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1226268
1226352
+
Leu
TAG
[ENA]
¡û
Identical group No.219178 (5 seq.)
>C171050543
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1885810
1885893
+
Leu
TAG
-
¡û
>WENV181915881
OGYF01023162
[OGYF] human gut metagenome; faeces
1923
1840
-
Leu
TAG
[ENA]
¢þ
>WENV182031327
OHCS01010137
[OHCS] human gut metagenome; feces
1806
1723
-
Leu
TAG
[ENA]
¢þ
>WENV182212670
OHQG01003305
[OHQG] human gut metagenome; feces
1806
1723
-
Leu
TAG
[ENA]
¢þ
>WENV182892054
OKSH01013694
[OKSH] human gut metagenome; faeces
432
349
-
Leu
TAG
[ENA]
¢þ
Identical group No.219736 (2 seq.)
>C121008063
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
714016
714099
+
Leu
TAG
[Ensembl]
¡û
>W1710594092
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
373727
373644
-
Leu
TAG
[ENA]
¡û
Identical group No.219814 (1 seq.)
>W1712039359
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
177067
177150
+
Leu
TAG
[ENA]
¡û
Identical group No.219944 (6 seq.)
>W141701195
JMKI01000026
Synergistota
Synergistes jonesii [JMKI]
32926
33009
+
Leu
TAG
[ENA]
¡û
>W1710629238
JPZQ01000030
Synergistota
Synergistes jonesii [JPZQ]
32134
32217
+
Leu
TAG
[ENA]
¡û
>W1710629282
JPZR01000022
Synergistota
Synergistes jonesii [JPZR]
31788
31871
+
Leu
TAG
[ENA]
¡û
>W1710629324
JPZS01000024
Synergistota
Synergistes jonesii [JPZS]
31788
31871
+
Leu
TAG
[ENA]
¡û
>W1710631844
JQEK01000046
Synergistota
Synergistes jonesii [JQEK]
31789
31872
+
Leu
TAG
[ENA]
¡û
>W1710631872
JQEL01000027
Synergistota
Synergistes jonesii [JQEL]
31788
31871
+
Leu
TAG
[ENA]
¡û
Identical group No.220499 (3 seq.)
>WENV170563764
CZCB01028589
[CZCB] anaerobic digester metagenome; anaerobic digester
1386
1466
+
Leu
TAG
[ENA]
¢þ
>W09126613
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
7568
7485
-
Leu
TAG
[ENA]
¡û
>W1710530841
FNPD01000009
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
87043
86960
-
Leu
TAG
[ENA]
¡û
Identical group No.220973 (3 seq.)
>W1711137605
LVBP01000284
Synergistota
Synergistales bacterium Syner_02 [LVBP]
12310
12227
-
Leu
TAG
[ENA]
¡û
>WENV180346449
OBLN01101719
[OBLN] sediment metagenome; sediment
225
308
+
Leu
TAG
[ENA]
¢þ
>W1610948725
LVBP01000284
Synergistota
Synergistales bacterium Syner_02 [LVBP]
12310
12227
-
Leu
TAG
[ENA]
¡û
Identical group No.221297 (8 seq.)
>WENV181908461
OGYB01000037
[OGYB] human gut metagenome; faeces
44420
44337
-
Leu
TAG
[ENA]
¢þ
>WENV182143796
OHKV01026302
[OHKV] human gut metagenome; feces
901
984
+
Leu
TAG
[ENA]
¢þ
>WENV182221121
OHQS01054092
[OHQS] human gut metagenome; feces
192
109
-
Leu
TAG
[ENA]
¢þ
>WENV182274844
OHUK01016053
[OHUK] human gut metagenome; feces
309
226
-
Leu
TAG
[ENA]
¢þ
>WENV182538222
OIXH01054339
[OIXH] human gut metagenome; faeces
1191
1108
-
Leu
TAG
[ENA]
¢þ
>WENV183039370
OLGB01006175
[OLGB] human gut metagenome; faeces
113
196
+
Leu
TAG
[ENA]
¢þ
>W141452031
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
523766
523849
+
Leu
TAG
[ENA]
¡û
>W121000499
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
91035
90952
-
Leu
TAG
[ENA]
¡û
Identical group No.222303 (1 seq.)
>C161104036
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1845992
1845909
-
Leu
TAG
-
¡û
Identical group No.223155 (3 seq.)
>W141146866
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15302
15385
+
Leu
TAG
[ENA]
¡û
>W09132975
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14484
14567
+
Leu
TAG
[ENA]
¡û
>W121017498
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
311045
311128
+
Leu
TAG
[ENA]
¡û
Identical group No.226422 (1 seq.)
>W121031635
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
866118
866201
+
Leu
TAG
[ENA]
¡û
Identical group No.226871 (3 seq.)
>WENV181409412
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38354
38271
-
Leu
TAG
[ENA]
¢þ
>W09110139
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
76285
76368
+
Leu
TAG
[ENA]
¡û
>C10112983
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879906
879989
+
Leu
TAG
[Ensembl]
¡û
Identical group No.232072 (1 seq.)
>W141278971
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
697464
697546
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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