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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504043 (3 seq.)
>WENV170676946
LDZS01003294
[LDZS] terrestrial metagenome; oil reservoir sample K3
2190
2115
-
Ala
TGC
[ENA]
¢þ
>W1610613314
LGFQ01000114
Synergistota
Synergistales bacterium 54_24 [LGFQ]
2190
2115
-
Ala
TGC
[ENA]
¡û
>W1710734521
LGFQ01000114
Synergistota
Synergistales bacterium 54_24 [LGFQ]
2190
2115
-
Ala
TGC
[ENA]
¡û
Identical group No.533787 (5 seq.)
>W1711744524
MUHX01000098
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
69
144
+
Ala
TGC
[ENA]
¡û
>WENV183419631
OMAZ01012602
[OMAZ] human gut metagenome; feces
647
722
+
Ala
TGC
[ENA]
¢þ
>WENV183720515
PDWJ01036119
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2522
2447
-
Ala
TGC
[ENA]
¢þ
>W10113039
ADFP01000088
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
136
61
-
Ala
TGC
[ENA]
¡û
>W11116266
ADFP01000088
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
136
61
-
Ala
TGC
[ENA]
¡û
Identical group No.554143 (1 seq.)
>W09132946
ACOO02000004
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
222173
222248
+
Ala
TGC
[ENA]
¡û
Identical group No.673444 (2 seq.)
>C121008084
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
883788
883714
-
Ala
TGC
[Ensembl]
¡û
>W1710594058
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
205328
205402
+
Ala
TGC
[ENA]
¡û
Identical group No.676116 (5 seq.)
>C171050536
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1510113
1510187
+
Ala
TGC
-
¡û
>WENV170725290
LSQX01337368
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1316
1242
-
Ala
TGC
[ENA]
¢þ
>W141452025
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
103699
103773
+
Ala
TGC
[ENA]
¡û
>C10100309
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
796611
796685
+
Ala
TGC
[Ensembl]
¡û
>W121000468
ACUH01000032
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
436
510
+
Ala
TGC
[ENA]
¡û
Identical group No.676526 (1 seq.)
>W141701200
JMKI01000028
Synergistota
Synergistes jonesii [JMKI]
713
787
+
Ala
TGC
[ENA]
¡û
Identical group No.706862 (1 seq.)
>W11138599
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1394312
1394386
+
Ala
TGC
[ENA]
¡û
Identical group No.727504 (2 seq.)
>W09126608
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
27369
27295
-
Ala
TGC
[ENA]
¡û
>W1710530815
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
297209
297283
+
Ala
TGC
[ENA]
¡û
Identical group No.752747 (3 seq.)
>W09110153
ABUW01000006
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
48738
48812
+
Ala
TGC
[ENA]
¡û
>C10113013
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1104758
1104684
-
Ala
TGC
[Ensembl]
¡û
>W121031625
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
784694
784768
+
Ala
TGC
[ENA]
¡û
Identical group No.762362 (1 seq.)
>W141278967
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
679259
679333
+
Ala
TGC
[ENA]
¡û
Identical group No.772062 (1 seq.)
>C121005683
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
904436
904510
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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