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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297659 (17 seq.)
>W1711799344
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
17034
16958
-
Thr
TGT
[ENA]
¡û
>W1711942851
NBBN01000052
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
177
101
-
Thr
TGT
[ENA]
¡û
>C013576
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
119681
119605
-
Thr
TGT
[Ensembl]
¡û
>C013582
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
335704
335780
+
Thr
TGT
[Ensembl]
¡û
>C013612
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
322170
322246
+
Thr
TGT
[Ensembl]
¡û
>W141004151
AFCG01000004
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
78061
78137
+
Thr
TGT
[ENA]
¡û
>PL191001809
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
26888
26812
-
Thr
TGT
[ENA]
¡û
>C181071526
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
560337
560413
+
Thr
TGT
-
¡û
>C181096459
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
350211
350135
-
Thr
TGT
-
¡û
>C191161516
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
334615
334691
+
Thr
TGT
-
¡û
>C191218238
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
355267
355191
-
Thr
TGT
-
¡û
>C151019168
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
355264
355188
-
Thr
TGT
[Ensembl]
¡û
>C151029050
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
480649
480725
+
Thr
TGT
[Ensembl]
¡û
>W1510472754
CQIE01000634
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
142
66
-
Thr
TGT
[ENA]
¡û
>C11114473
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
350827
350903
+
Thr
TGT
[Ensembl]
¡û
>C131002146
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
350932
351008
+
Thr
TGT
[Ensembl]
¡û
>C131007157
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
348564
348640
+
Thr
TGT
[Ensembl]
¡û
Identical group No.452083 (53 seq.)
>C171068149
CP017813
Mycoplasmatota
Mycoplasmopsis pullorum B359_6 [CP017813]
542170
542245
+
Thr
TGT
-
¡û
>W131182366
ARQH01000039
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 [ARQH]
24509
24434
-
Thr
TGT
[ENA]
¡û
>W131221263
AUAH01000005
Mycoplasmatota
Mycoplasmopsis arginini ATCC 23838 [AUAH]
26178
26103
-
Thr
TGT
[ENA]
¡û
>C014122
AE017245
Mycoplasmatota
Mycoplasmopsis synoviae 53 [AE017245]
11227
11302
+
Thr
TGT
[Ensembl]
¡û
>W141280420
JAHB01000001
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
24743
24818
+
Thr
TGT
[ENA]
¡û
>PL191001781
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
855716
855641
-
Thr
TGT
[ENA]
¡û
>PL191001841
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
112886
112961
+
Thr
TGT
[ENA]
¡û
>PL191001858
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
334677
334602
-
Thr
TGT
[ENA]
¡û
>C181049455
CP021129
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [CP021129]
11227
11302
+
Thr
TGT
-
¡û
>C181093495
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
667014
667089
+
Thr
TGT
-
¡û
>C181188654
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
719576
719651
+
Thr
TGT
-
¡û
>C191001014
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
41903
41978
+
Thr
TGT
-
¡û
>C191183012
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
405976
405901
-
Thr
TGT
-
¡û
>C191189305
KP704286
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [KP704286]
537548
537623
+
Thr
TGT
-
¡û
>C191218080
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
692208
692283
+
Thr
TGT
-
¡û
>C191218145
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
486112
486187
+
Thr
TGT
-
¡û
>C191218266
LR214972
Mycoplasmatota
Mycoplasmopsis bovirhinis NCTC10118 [LR214972]
764143
764068
-
Thr
TGT
-
¡û
>C191218348
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
666841
666916
+
Thr
TGT
-
¡û
>C191218443
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
226852
226927
+
Thr
TGT
-
¡û
>C191218533
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
825495
825420
-
Thr
TGT
-
¡û
>C191218552
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
564995
565070
+
Thr
TGT
-
¡û
>C191218592
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
854585
854660
+
Thr
TGT
-
¡û
>C191218630
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
752666
752591
-
Thr
TGT
-
¡û
>C191224812
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
119348
119423
+
Thr
TGT
-
¡û
>C191224869
LS991953
Mycoplasmatota
Mycoplasmopsis synoviae NCTC10124 [LS991953]
11170
11245
+
Thr
TGT
-
¡û
>W141560589
JHXS01000003
Mycoplasmatota
Mycoplasmopsis felifaucium ATCC 43428 [JHXS]
42388
42463
+
Thr
TGT
[ENA]
¡û
>W141561115
JHYE01000005
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
51047
50972
-
Thr
TGT
[ENA]
¡û
>W141731304
JNIZ01000003
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
57288
57363
+
Thr
TGT
[ENA]
¡û
>W141732232
JNJV01000015
Mycoplasmatota
Mycoplasmopsis primatum ATCC 25948 [JNJV]
17358
17283
-
Thr
TGT
[ENA]
¡û
>W141732356
JNJZ01000005
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
79175
79250
+
Thr
TGT
[ENA]
¡û
>W141732392
JNKA01000020
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
17624
17699
+
Thr
TGT
[ENA]
¡û
>W141807443
JPOK01000005
Mycoplasmatota
Mycoplasma buteonis [JPOK]
102435
102510
+
Thr
TGT
[ENA]
¡û
>W1910002630
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46769
46844
+
Thr
TGT
[ENA]
¡û
>W1910002665
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40335
40410
+
Thr
TGT
[ENA]
¡û
>C09107657
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399245
399320
+
Thr
TGT
[Ensembl]
¡û
>W1911768462
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
19479
19404
-
Thr
TGT
[ENA]
¡û
>C151075546
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
615373
615448
+
Thr
TGT
[Ensembl]
¡û
>C151076500
CP011096
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 WVU1853 [CP011096]
11226
11301
+
Thr
TGT
[Ensembl]
¡û
>C151081624
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
406210
406285
+
Thr
TGT
[Ensembl]
¡û
>C151099847
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
863062
862987
-
Thr
TGT
[Ensembl]
¡û
>W10116146
ADNC01000007
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
12732
12657
-
Thr
TGT
[ENA]
¡û
>C10109277
CP001991
Mycoplasmatota
Mycoplasma crocodyli MP145 [CP001991]
710559
710484
-
Thr
TGT
[Ensembl]
¡û
>C11114237
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309241
309316
+
Thr
TGT
[Ensembl]
¡û
>C11114272
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343391
343466
+
Thr
TGT
[Ensembl]
¡û
>W11120680
ADNC01000007
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
12732
12657
-
Thr
TGT
[ENA]
¡û
>W11174740
AFVJ01000030
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
2098
2173
+
Thr
TGT
[ENA]
¡û
>C161070536
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
384333
384408
+
Thr
TGT
-
¡û
>W121060472
AJFQ01000005
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
18243
18168
-
Thr
TGT
[ENA]
¡û
>W121060503
AJFR01000004
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
18244
18169
-
Thr
TGT
[ENA]
¡û
>W121060534
AJFS01000004
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
18244
18169
-
Thr
TGT
[ENA]
¡û
>W121060565
AJFT01000004
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
18244
18169
-
Thr
TGT
[ENA]
¡û
>W121060596
AJFU01000005
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
18241
18166
-
Thr
TGT
[ENA]
¡û
>W1710601354
FUXF01000027
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
1832
1907
+
Thr
TGT
[ENA]
¡û
Identical group No.527824 (8 seq.)
>C171051519
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
659029
658954
-
Thr
TGT
-
¡û
>PL191001726
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
665250
665175
-
Thr
TGT
[ENA]
¡û
>C141009331
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
659116
659041
-
Thr
TGT
[Ensembl]
¡û
>C10109448
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
661126
661051
-
Thr
TGT
[Ensembl]
¡û
>W1510643875
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
18645
18720
+
Thr
TGT
[ENA]
¡û
>C11114502
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
653642
653717
+
Thr
TGT
[Ensembl]
¡û
>C121009158
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
659133
659058
-
Thr
TGT
[Ensembl]
¡û
>C131009715
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
660028
659953
-
Thr
TGT
[Ensembl]
¡û
Identical group No.529095 (10 seq.)
>W141170959
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
310185
310110
-
Thr
TGT
[ENA]
¡û
>W141464160
JFKG01000030
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKG]
38181
38106
-
Thr
TGT
[ENA]
¡û
>W141464172
JFKH01000021
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKH]
15790
15865
+
Thr
TGT
[ENA]
¡û
>W141464198
JFKI01000002
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKI]
15963
16038
+
Thr
TGT
[ENA]
¡û
>W141464252
JFKJ01000043
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKJ]
39288
39213
-
Thr
TGT
[ENA]
¡û
>W141464263
JFKK01000001
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKK]
10785
10860
+
Thr
TGT
[ENA]
¡û
>W141464309
JFKL01000035
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKL]
51548
51473
-
Thr
TGT
[ENA]
¡û
>W141464335
JFKM01000005
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKM]
20015
20090
+
Thr
TGT
[ENA]
¡û
>PL191001701
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
186247
186172
-
Thr
TGT
[ENA]
¡û
>C191008265
CP008748
Mycoplasmatota
Metamycoplasma hyosynoviae M60 [CP008748]
675623
675698
+
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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