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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = CGT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311868 (3 seq.)
>WENV181192194
OEPS010463924
[OEPS] soil metagenome; soil
56
132
+
Thr
CGT
[ENA]
¢þ
>SRA1002849
SRR002326.57595
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
119
43
-
Thr
CGT
[SRA]
>ENV09000973
ABSQ01006531
Freshwater sediment metagenome lwMethenol_C1
612
536
-
Thr
CGT
[ENA]
¡û
Identical group No.326018 (4 seq.)
>WENV180331363
OBLA01014879
[OBLA] soil metagenome; Alaskan Permafrost
142
218
+
Thr
CGT
[ENA]
¢þ
>WENV183092685
OLLI01001524
[OLLI] soil metagenome; soil
1467
1391
-
Thr
CGT
[ENA]
¢þ
>SRA1003962
SRR002328.60193
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
148
72
-
Thr
CGT
[SRA]
>W1810535020
QDDJ01000001
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
14846
14770
-
Thr
CGT
[ENA]
¡û
Identical group No.454488 (62 seq.)
>W1710854955
LLXX01000224
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
422
497
+
Thr
CGT
[ENA]
¡û
>W1710855003
LLXY01000198
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
33171
33096
-
Thr
CGT
[ENA]
¡û
>W1710855039
LLXZ01000054
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
38443
38518
+
Thr
CGT
[ENA]
¡û
>W1710855090
LLYA01000068
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
17308
17383
+
Thr
CGT
[ENA]
¡û
>W1710855092
LLYA01000068
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
119751
119676
-
Thr
CGT
[ENA]
¡û
>W1710855182
LLYB01000123
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
232742
232817
+
Thr
CGT
[ENA]
¡û
>W1710861442
LMDP01000003
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
839893
839968
+
Thr
CGT
[ENA]
¡û
>W1710892781
LNEC01000019
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
266574
266649
+
Thr
CGT
[ENA]
¡û
>W1711169168
LVYV01000001
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
1004253
1004178
-
Thr
CGT
[ENA]
¡û
>W131184855
ARTG01000011
Alphaproteobacteria
Hyphomicrobium zavarzinii ATCC 27496 [ARTG]
274633
274558
-
Thr
CGT
[ENA]
¡û
>W1711317183
MAXB01000065
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53204
53129
-
Thr
CGT
[ENA]
¡û
>W1711317225
MAXC01000023
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
44085
44010
-
Thr
CGT
[ENA]
¡û
>W131226897
AUES01000020
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
24195
24270
+
Thr
CGT
[ENA]
¡û
>W1711504262
MKUJ01000014
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
83575
83500
-
Thr
CGT
[ENA]
¡û
>WENV180344545
OBLL01032406
[OBLL] soil metagenome; soil
242
167
-
Thr
CGT
[ENA]
¢þ
>WENV180345214
OBLM01130714
[OBLM] soil metagenome; soil
100
25
-
Thr
CGT
[ENA]
¢þ
>WENV181166657
OEIU01001028
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
18003
18078
+
Thr
CGT
[ENA]
¢þ
>WENV181188991
OEOE01555496
[OEOE] activated sludge metagenome; Activated Sludge
170
95
-
Thr
CGT
[ENA]
¢þ
>WENV181189800
OEOF01230456
[OEOF] activated sludge metagenome; Activated Sludge
110
185
+
Thr
CGT
[ENA]
¢þ
>WENV181222810
OFDC01000317
[OFDC] hot springs metagenome; Water
31768
31693
-
Thr
CGT
[ENA]
¢þ
>WENV181226817
OFDN01000108
[OFDN] hot springs metagenome; Water
57782
57707
-
Thr
CGT
[ENA]
¢þ
>W141151104
AXAU01000008
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
130503
130578
+
Thr
CGT
[ENA]
¡û
>WENV183725391
PJQE01265176
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
190
265
+
Thr
CGT
[ENA]
¢þ
>WENV170553212
CXWK01011075
[CXWK] wastewater metagenome; activated sludge
1461
1536
+
Thr
CGT
[ENA]
¢þ
>WENV170577373
FRDC01004987
[FRDC] freshwater metagenome; water
31492
31417
-
Thr
CGT
[ENA]
¢þ
>WENV170650005
JRYD01003147
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1585
1510
-
Thr
CGT
[ENA]
¢þ
>WENV170650492
JRYE01001521
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
5995
5920
-
Thr
CGT
[ENA]
¢þ
>WENV170652407
JRYH01002250
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
4386
4311
-
Thr
CGT
[ENA]
¢þ
>WENV170652774
JRYH01025846
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1089
1014
-
Thr
CGT
[ENA]
¢þ
>WENV170653019
JRYI01000879
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
5726
5651
-
Thr
CGT
[ENA]
¢þ
>WENV170706111
LNAP01001170
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27984
27909
-
Thr
CGT
[ENA]
¢þ
>WENV170706877
LNAP01008093
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8456
8381
-
Thr
CGT
[ENA]
¢þ
>WENV170709256
LNFM01000219
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
284914
284989
+
Thr
CGT
[ENA]
¢þ
>WENV170709905
LNFM01000881
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
101410
101485
+
Thr
CGT
[ENA]
¢þ
>WENV170710941
LNFM01003064
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
34865
34790
-
Thr
CGT
[ENA]
¢þ
>WENV170973380
MTKY01034502
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
659
584
-
Thr
CGT
[ENA]
¢þ
>W1910236490
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
1526036
1525961
-
Thr
CGT
[ENA]
¡û
>C141010482
CP006912
Alphaproteobacteria
Hyphomicrobium nitrativorans NL23 [CP006912]
267281
267356
+
Thr
CGT
[Ensembl]
¡û
>W1910548939
FZOX01000001
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
1184312
1184387
+
Thr
CGT
[ENA]
¡û
>SRA1003900
SRR002328.18976
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
122
197
+
Thr
CGT
[SRA]
>W1810395549
PYCM01000585
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
330
405
+
Thr
CGT
[ENA]
¡û
>W1810395625
PYCN01000019
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
134265
134340
+
Thr
CGT
[ENA]
¡û
>W1810576934
QENW01000001
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
534165
534240
+
Thr
CGT
[ENA]
¡û
>W1810784373
QRAQ01000002
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
1290179
1290254
+
Thr
CGT
[ENA]
¡û
>W1511533361
JYMT01000024
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
12067
12142
+
Thr
CGT
[ENA]
¡û
>W1511533404
JYMU01000010
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
103042
102967
-
Thr
CGT
[ENA]
¡û
>C161097202
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
8257158
8257083
-
Thr
CGT
[Ensembl]
¡û
>W1610717296
LLXX01000224
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
422
497
+
Thr
CGT
[ENA]
¡û
>W1610717344
LLXY01000198
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
33171
33096
-
Thr
CGT
[ENA]
¡û
>W1610717380
LLXZ01000054
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
38443
38518
+
Thr
CGT
[ENA]
¡û
>W1610717431
LLYA01000068
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
17308
17383
+
Thr
CGT
[ENA]
¡û
>W1610717433
LLYA01000068
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
119751
119676
-
Thr
CGT
[ENA]
¡û
>W1610717523
LLYB01000123
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
232742
232817
+
Thr
CGT
[ENA]
¡û
>W1610723788
LMDP01000003
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
839893
839968
+
Thr
CGT
[ENA]
¡û
>W1610753047
LNEC01000019
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
266574
266649
+
Thr
CGT
[ENA]
¡û
>W1610978963
LVYV01000001
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
1004253
1004178
-
Thr
CGT
[ENA]
¡û
>W1611061253
MAXB01000065
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53204
53129
-
Thr
CGT
[ENA]
¡û
>W1611061295
MAXC01000023
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
44085
44010
-
Thr
CGT
[ENA]
¡û
>W1710536619
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
3635961
3636036
+
Thr
CGT
[ENA]
¡û
>W1710540662
FNWZ01000002
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
643343
643268
-
Thr
CGT
[ENA]
¡û
>W1710568409
FOTP01000001
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
1450612
1450687
+
Thr
CGT
[ENA]
¡û
>W1710594273
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
1620135
1620060
-
Thr
CGT
[ENA]
¡û
Identical group No.455125 (35 seq.)
>W1711072484
LSHQ01000026
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
6848
6773
-
Thr
CGT
[ENA]
¡û
>W1711072790
LSHX01000052
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
6848
6773
-
Thr
CGT
[ENA]
¡û
>W1711073055
LSIE01000110
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
99226
99301
+
Thr
CGT
[ENA]
¡û
>W1711073964
LSJC01000044
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
14994
15069
+
Thr
CGT
[ENA]
¡û
>W1711075116
LSKD01000014
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
63046
63121
+
Thr
CGT
[ENA]
¡û
>W1711075251
LSKG01000038
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
3151
3076
-
Thr
CGT
[ENA]
¡û
>W1711075370
LSKI01000188
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
14996
15071
+
Thr
CGT
[ENA]
¡û
>W1711075597
LSKO01000882
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
14998
15073
+
Thr
CGT
[ENA]
¡û
>WENV181234071
OFET01001841
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
4326
4252
-
Thr
CGT
[ENA]
¢þ
>WENV181234709
OFEU01001793
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
4360
4286
-
Thr
CGT
[ENA]
¢þ
>W141191322
AYOY01000007
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
4129
4054
-
Thr
CGT
[ENA]
¡û
>WENV182541892
OJAU01024707
[OJAU] seawater metagenome; Sea water
191
116
-
Thr
CGT
[ENA]
¢þ
>WENV182546288
OJBO01005956
[OJBO] seawater metagenome; Sea water
297
222
-
Thr
CGT
[ENA]
¢þ
>WENV182547888
OJBU01001162
[OJBU] seawater metagenome; Sea water
1217
1292
+
Thr
CGT
[ENA]
¢þ
>WENV182549227
OJBY01000016
[OJBY] seawater metagenome; Sea water
41772
41847
+
Thr
CGT
[ENA]
¢þ
>WENV182558743
OJDN01002237
[OJDN] seawater metagenome; Sea water
1441
1366
-
Thr
CGT
[ENA]
¢þ
>WENV182568035
OJEP01017779
[OJEP] seawater metagenome; Sea water
460
385
-
Thr
CGT
[ENA]
¢þ
>WENV182572692
OJFM01004096
[OJFM] seawater metagenome; Sea water
948
873
-
Thr
CGT
[ENA]
¢þ
>WENV182593199
OJIT01004231
[OJIT] seawater metagenome; Sea water
1711
1636
-
Thr
CGT
[ENA]
¢þ
>WENV170981498
MWVT01110576
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
233
158
-
Thr
CGT
[ENA]
¢þ
>WENV170985265
MWVW01051205
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
537
462
-
Thr
CGT
[ENA]
¢þ
>WENV170999461
MWWK01064441
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
243
168
-
Thr
CGT
[ENA]
¢þ
>W1911398127
NWMW01000002
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1027858
1027783
-
Thr
CGT
[ENA]
¡û
>W1911752756
QWLV01000001
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
316588
316513
-
Thr
CGT
[ENA]
¡û
>SRA1004009
SRR002328.94470
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
73
1
-
Thr
CGT
[SRA]
>C151079683
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
965228
965153
-
Thr
CGT
[Ensembl]
¡û
>W1511352581
JROH01000045
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
27285
27360
+
Thr
CGT
[ENA]
¡û
>W1610911744
LSHQ01000026
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
6848
6773
-
Thr
CGT
[ENA]
¡û
>W1610912050
LSHX01000052
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
6848
6773
-
Thr
CGT
[ENA]
¡û
>W1610912360
LSIE01000110
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
99226
99301
+
Thr
CGT
[ENA]
¡û
>W1610913269
LSJC01000044
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
14994
15069
+
Thr
CGT
[ENA]
¡û
>W1610914421
LSKD01000014
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
63046
63121
+
Thr
CGT
[ENA]
¡û
>W1610914556
LSKG01000038
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
3151
3076
-
Thr
CGT
[ENA]
¡û
>W1610914675
LSKI01000188
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
14996
15071
+
Thr
CGT
[ENA]
¡û
>W1610914902
LSKO01000882
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
14998
15073
+
Thr
CGT
[ENA]
¡û
Identical group No.457380 (26 seq.)
>W1710860359
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
226913
226838
-
Thr
CGT
[ENA]
¡û
>w013975
AAOB01000010
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
40492
40569
+
Thr
CGT
[ENA]
¡û
>WENV180016228
FSUF01001537
[FSUF] metagenome; soil
3186
3112
-
Thr
CGT
[ENA]
¢þ
>W141809710
JPRS01000138
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
30301
30226
-
Thr
CGT
[ENA]
¡û
>W141809720
JPRS01000249
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
67
142
+
Thr
CGT
[ENA]
¡û
>W1911823607
QZVS01000085
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
101218
101145
-
Thr
CGT
[ENA]
¡û
>SRA1002931
SRR002326.107401
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
206
131
-
Thr
CGT
[SRA]
>W1810168639
PJJJ01000037
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
34281
34206
-
Thr
CGT
[ENA]
¡û
>W1810168678
PJJK01000118
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
61035
60960
-
Thr
CGT
[ENA]
¡û
>W1810168700
PJJL01000069
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
223199
223272
+
Thr
CGT
[ENA]
¡û
>W1810168752
PJJM01000095
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
122989
123064
+
Thr
CGT
[ENA]
¡û
>W1810168769
PJJN01000022
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
43267
43342
+
Thr
CGT
[ENA]
¡û
>W1810168828
PJJO01000055
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
175951
175877
-
Thr
CGT
[ENA]
¡û
>W1810168928
PJJQ01000033
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
253829
253904
+
Thr
CGT
[ENA]
¡û
>W1810168967
PJJR01000051
Actinomycetota
Cryobacterium sp. N19 [PJJR]
252211
252286
+
Thr
CGT
[ENA]
¡û
>W1810169078
PJJT01000091
Actinomycetota
Cryobacterium sp. M91 [PJJT]
281030
280955
-
Thr
CGT
[ENA]
¡û
>W1810169215
PJJW01000041
Actinomycetota
Cryobacterium sp. M15 [PJJW]
255331
255256
-
Thr
CGT
[ENA]
¡û
>SRA1003269
SRR002326.353682
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
83
8
-
Thr
CGT
[SRA]
>W1810240356
PPTG01000002
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
186085
186160
+
Thr
CGT
[ENA]
¡û
>W1511317433
JPXF01000065
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
25980
26055
+
Thr
CGT
[ENA]
¡û
>W121043566
AHWA01000006
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
26182
26255
+
Thr
CGT
[ENA]
¡û
>W1610722705
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
226913
226838
-
Thr
CGT
[ENA]
¡û
>WENV078449
AAGA01015642
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
346
423
+
Thr
CGT
[ENA]
>W1710523523
FNIB01000002
Actinomycetota
Cryobacterium flavum [FNIB]
168919
168844
-
Thr
CGT
[ENA]
¡û
>W1710546925
FOCN01000007
Actinomycetota
Cryobacterium luteum [FOCN]
115627
115702
+
Thr
CGT
[ENA]
¡û
>W1710563681
FOPW01000007
Actinomycetota
Cryobacterium levicorallinum [FOPW]
195397
195472
+
Thr
CGT
[ENA]
¡û
Identical group No.462421 (36 seq.)
>W1710871153
LMLB01000017
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
338862
338787
-
Thr
CGT
[ENA]
¡û
>W131098349
AORL01000009
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
25890
25815
-
Thr
CGT
[ENA]
¡û
>W1711506426
MKWJ01000032
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
428
353
-
Thr
CGT
[ENA]
¡û
>W1712049828
NFUR01000001
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
1218725
1218800
+
Thr
CGT
[ENA]
¡û
>WENV180016153
FSUD01000881
[FSUD] metagenome; soil
3740
3665
-
Thr
CGT
[ENA]
¢þ
>WENV180020426
FTCZ01003569
[FTCZ] metagenome; soil
2295
2220
-
Thr
CGT
[ENA]
¢þ
>WENV180020526
FTCZ01005462
[FTCZ] metagenome; soil
1268
1193
-
Thr
CGT
[ENA]
¢þ
>WENV180026285
FTIT01000919
[FTIT] metagenome; soil
261
186
-
Thr
CGT
[ENA]
¢þ
>WENV180100131
OAOK01000030
[OAOK] sediment metagenome; sediment
860
935
+
Thr
CGT
[ENA]
¢þ
>WENV180100437
OAON01001645
[OAON] sediment metagenome; sediment
719
794
+
Thr
CGT
[ENA]
¢þ
>WENV180355248
OBNH01000068
[OBNH] sediment metagenome; sediment
64238
64163
-
Thr
CGT
[ENA]
¢þ
>WENV180355541
OBNI01000472
[OBNI] sediment metagenome; sediment
5477
5402
-
Thr
CGT
[ENA]
¢þ
>WENV180355854
OBNJ01001652
[OBNJ] sediment metagenome; sediment
839
914
+
Thr
CGT
[ENA]
¢þ
>WENV180356154
OBNK01000455
[OBNK] sediment metagenome; sediment
8365
8290
-
Thr
CGT
[ENA]
¢þ
>WENV183744792
PJUL01000242
[PJUL] feces metagenome; Chicken feces enriched on filter paper
4373
4448
+
Thr
CGT
[ENA]
¢þ
>WENV183749912
PPFU01231240
[PPFU] hypolithon metagenome; Antarctic Hypolithon
484
409
-
Thr
CGT
[ENA]
¢þ
>WENV170012403
APMI01168694
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
576
651
+
Thr
CGT
[ENA]
¢þ
>WENV170707142
LNAP01013745
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
112
187
+
Thr
CGT
[ENA]
¢þ
>WENV170991817
MWWA01335453
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
170
245
+
Thr
CGT
[ENA]
¢þ
>W1911247251
NSLI01000003
Alphaproteobacteria
Sphingomonas lenta 1PNM-20 [NSLI]
479614
479689
+
Thr
CGT
[ENA]
¡û
>W1911494785
OBMI01000004
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
30051
30126
+
Thr
CGT
[ENA]
¡û
>W1911765807
QXDC01000005
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
239141
239066
-
Thr
CGT
[ENA]
¡û
>SRA1003370
SRR002326.416003
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
159
234
+
Thr
CGT
[SRA]
>SRA1003987
SRR002328.75745
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
217
142
-
Thr
CGT
[SRA]
>SRA1004263
SRR002328.230911
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
81
6
-
Thr
CGT
[SRA]
>W1810577282
QEOD01000001
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
479226
479151
-
Thr
CGT
[ENA]
¡û
>W1511591713
LBHU01000001
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
342766
342841
+
Thr
CGT
[ENA]
¡û
>W1511629871
LDCP01000001
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
995331
995256
-
Thr
CGT
[ENA]
¡û
>W1610076503
BCYU01000006
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
55879
55804
-
Thr
CGT
[ENA]
¡û
>W1610076645
BCYX01000005
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
58826
58751
-
Thr
CGT
[ENA]
¡û
>W1610076763
BCYZ01000072
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
14946
14871
-
Thr
CGT
[ENA]
¡û
>W1610733499
LMLB01000017
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
338862
338787
-
Thr
CGT
[ENA]
¡û
>W1710074192
BCYU01000006
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
55879
55804
-
Thr
CGT
[ENA]
¡û
>W1710074334
BCYX01000005
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
58826
58751
-
Thr
CGT
[ENA]
¡û
>W1710074452
BCYZ01000072
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
14946
14871
-
Thr
CGT
[ENA]
¡û
>W1710575580
FOZG01000003
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
584227
584302
+
Thr
CGT
[ENA]
¡û
Identical group No.467207 (31 seq.)
>W1710860007
LMCN01000023
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
144287
144212
-
Thr
CGT
[ENA]
¡û
>W1710861295
LMDM01000045
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
32751
32676
-
Thr
CGT
[ENA]
¡û
>W1710861549
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
930736
930661
-
Thr
CGT
[ENA]
¡û
>W1710861854
LMDY01000003
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
63532
63607
+
Thr
CGT
[ENA]
¡û
>W1710866443
LMHL01000047
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
32683
32608
-
Thr
CGT
[ENA]
¡û
>W1711394666
MEQN01000068
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
27287
27212
-
Thr
CGT
[ENA]
¡û
>WENV180253123
OBEQ010508322
[OBEQ] groundwater metagenome; groundwater
849
774
-
Thr
CGT
[ENA]
¢þ
>WENV180255365
OBEQ010717458
[OBEQ] groundwater metagenome; groundwater
6875
6950
+
Thr
CGT
[ENA]
¢þ
>WENV180356817
OBNL01038300
[OBNL] marine metagenome; ENVO:00002010
219
144
-
Thr
CGT
[ENA]
¢þ
>WENV181187936
OEOE01003779
[OEOE] activated sludge metagenome; Activated Sludge
938
863
-
Thr
CGT
[ENA]
¢þ
>WENV181192637
OEPS010858806
[OEPS] soil metagenome; soil
36
111
+
Thr
CGT
[ENA]
¢þ
>W141170904
AXZB01000028
Betaproteobacteria
Burkholderiales bacterium JGI 0001003-A5 [AXZB]
6366
6441
+
Thr
CGT
[ENA]
¡û
>WENV170551441
CXWJ01007809
[CXWJ] wastewater metagenome; activated sludge
1824
1749
-
Thr
CGT
[ENA]
¢þ
>WENV170551442
CXWJ01007810
[CXWJ] wastewater metagenome; activated sludge
4693
4768
+
Thr
CGT
[ENA]
¢þ
>WENV170553832
CXWK01033126
[CXWK] wastewater metagenome; activated sludge
713
638
-
Thr
CGT
[ENA]
¢þ
>WENV170556726
CXWL01012797
[CXWL] groundwater metagenome; biofilm material
19216
19141
-
Thr
CGT
[ENA]
¢þ
>WENV170707685
LNAP01029506
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1335
1260
-
Thr
CGT
[ENA]
¢þ
>C191018740
CP021250
Betaproteobacteria
Bordetella sp. J329 [CP021250]
1083557
1083632
+
Thr
CGT
-
¡û
>C191116569
CP033936
Betaproteobacteria
Kerstersia gyiorum SWMUKG01 [CP033936]
1169666
1169741
+
Thr
CGT
-
¡û
>SRA1003993
SRR002328.81942
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
67
142
+
Thr
CGT
[SRA]
>W1810666658
QJOU01000034
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
10019
9944
-
Thr
CGT
[ENA]
¡û
>W1511433145
JUGZ01000013
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
153338
153263
-
Thr
CGT
[ENA]
¡û
>W1511433199
JUHA01000012
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
25037
25112
+
Thr
CGT
[ENA]
¡û
>W1511595731
LBNE01000012
Betaproteobacteria
Kerstersia gyiorum CG1 [LBNE]
38720
38645
-
Thr
CGT
[ENA]
¡û
>W121036349
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
3575424
3575499
+
Thr
CGT
[ENA]
¡û
>W1610722353
LMCN01000023
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
144287
144212
-
Thr
CGT
[ENA]
¡û
>W1610723641
LMDM01000045
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
32751
32676
-
Thr
CGT
[ENA]
¡û
>W1610723895
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
930736
930661
-
Thr
CGT
[ENA]
¡û
>W1610724200
LMDY01000003
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
63532
63607
+
Thr
CGT
[ENA]
¡û
>W1610728789
LMHL01000047
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
32683
32608
-
Thr
CGT
[ENA]
¡û
>W1710592646
FRCQ01000004
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
312575
312650
+
Thr
CGT
[ENA]
¡û
Identical group No.506893 (1 seq.)
>SRA1002898
SRR002326.84412
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
72
-1
-
Thr
CGT
[SRA]
Identical group No.506918 (1 seq.)
>SRA1003095
SRR002326.194932
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
150
75
-
Thr
CGT
[SRA]
Identical group No.506935 (1 seq.)
>SRA1003214
SRR002326.309762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
133
58
-
Thr
CGT
[SRA]
Identical group No.506942 (2 seq.)
>SRA1003344
SRR002326.402425
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
162
87
-
Thr
CGT
[SRA]
>SRA1003932
SRR002328.46395
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
75
150
+
Thr
CGT
[SRA]
Identical group No.529491 (2 seq.)
>SRA1003961
SRR002328.59502
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
216
143
-
Thr
CGT
[SRA]
>W1511582938
LATM01000004
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
233004
233080
+
Thr
CGT
[ENA]
¡û
Identical group No.585232 (1 seq.)
>SRA1003921
SRR002328.37130
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
172
247
+
Thr
CGT
[SRA]
Identical group No.585236 (1 seq.)
>SRA1003979
SRR002328.68784
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
78
3
-
Thr
CGT
[SRA]
Identical group No.585247 (1 seq.)
>SRA1004090
SRR002328.140484
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
87
11
-
Thr
CGT
[SRA]
Identical group No.685988 (1 seq.)
>SRA1003033
SRR002326.163113
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
63
137
+
Thr
CGT
[SRA]
Identical group No.686016 (1 seq.)
>SRA1003236
SRR002326.327798
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
200
126
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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