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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = TAA
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9807 (1 seq.)
>SRA1003595
SRR002327.56540
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
262
169
-
Leu
TAA
[SRA]
Identical group No.10782 (1 seq.)
>SRA1004155
SRR002328.175367
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
100
193
+
Leu
TAA
[SRA]
Identical group No.14306 (2 seq.)
>SRA1002960
SRR002326.125962
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
32
124
+
Leu
TAA
[SRA]
>SRA1004118
SRR002328.156956
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
141
-
Leu
TAA
[SRA]
Identical group No.15443 (1 seq.)
>SRA1003815
SRR002327.200990
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
211
119
-
Leu
TAA
[SRA]
Identical group No.22547 (1 seq.)
>SRA1003218
SRR002326.312723
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
101
192
+
Leu
TAA
[SRA]
Identical group No.26595 (2 seq.)
>W1910698849
MEPU01000001
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
256
165
-
Leu
TAA
[ENA]
¡û
>SRA1003977
SRR002328.68423
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
174
264
+
Leu
TAA
[SRA]
Identical group No.40631 (1 seq.)
>SRA1004249
SRR002328.222535
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
119
207
+
Leu
TAA
[SRA]
Identical group No.76317 (1 seq.)
>SRA1003078
SRR002326.184593
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
196
284
+
Leu
TAA
[SRA]
Identical group No.76318 (1 seq.)
>SRA1003483
SRR002326.494426
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
141
53
-
Leu
TAA
[SRA]
Identical group No.78506 (1 seq.)
>SRA1003656
SRR002327.100762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
235
+
Leu
TAA
[SRA]
Identical group No.78507 (1 seq.)
>SRA1003759
SRR002327.167585
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
172
260
+
Leu
TAA
[SRA]
Identical group No.78508 (1 seq.)
>SRA1003840
SRR002327.221885
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
211
125
-
Leu
TAA
[SRA]
Identical group No.82023 (1 seq.)
>SRA1003920
SRR002328.36709
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
171
83
-
Leu
TAA
[SRA]
Identical group No.82024 (1 seq.)
>SRA1004274
SRR002328.241475
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
64
152
+
Leu
TAA
[SRA]
Identical group No.90173 (82 seq.)
>W1710905381
LNNF01000169
Bacteroidota
Flavobacterium psychrophilum [LNNF]
95216
95303
+
Leu
TAA
[ENA]
¡û
>W1710914548
LNTP01000157
Bacteroidota
Flavobacterium psychrophilum [LNTP]
41606
41693
+
Leu
TAA
[ENA]
¡û
>W1710914591
LNTQ01000128
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
7760
7673
-
Leu
TAA
[ENA]
¡û
>W1711053998
LRTL01000005
Bacteroidota
Flavobacterium psychrophilum [LRTL]
68975
69062
+
Leu
TAA
[ENA]
¡û
>W1711431518
MIJV01000033
Bacteroidota
Flavobacterium psychrophilum [MIJV]
63240
63153
-
Leu
TAA
[ENA]
¡û
>W1711712444
MTBY01000007
Bacteroidota
Flavobacterium psychrophilum [MTBY]
128638
128551
-
Leu
TAA
[ENA]
¡û
>W1711712479
MTBZ01000007
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
50489
50402
-
Leu
TAA
[ENA]
¡û
>W1711712570
MTCB01000005
Bacteroidota
Flavobacterium psychrophilum [MTCB]
73850
73937
+
Leu
TAA
[ENA]
¡û
>W1711712600
MTCC01000003
Bacteroidota
Flavobacterium psychrophilum [MTCC]
96957
96870
-
Leu
TAA
[ENA]
¡û
>W1711712658
MTCD01000319
Bacteroidota
Flavobacterium psychrophilum [MTCD]
11052
11139
+
Leu
TAA
[ENA]
¡û
>C009536
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
480752
480665
-
Leu
TAA
[Ensembl]
¡û
>C181220293
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
483469
483384
-
Leu
TAA
-
¡û
>W1910184579
BJSV01000018
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
1318
1233
-
Leu
TAA
[ENA]
¡û
>W1910184635
BJSW01000057
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
1318
1233
-
Leu
TAA
[ENA]
¡û
>W1910184652
BJSX01000011
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
73097
73012
-
Leu
TAA
[ENA]
¡û
>W1910184686
BJSY01000009
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
38393
38478
+
Leu
TAA
[ENA]
¡û
>W1910184721
BJSZ01000004
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
1318
1233
-
Leu
TAA
[ENA]
¡û
>W1910184758
BJTA01000005
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
1318
1233
-
Leu
TAA
[ENA]
¡û
>W1910184867
BJTD01000007
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
69852
69767
-
Leu
TAA
[ENA]
¡û
>W1910184924
BJTE01000033
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
1220
1135
-
Leu
TAA
[ENA]
¡û
>W1910184970
BJTF01000066
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
38392
38477
+
Leu
TAA
[ENA]
¡û
>W1910502977
FYBY01000021
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
63145
63060
-
Leu
TAA
[ENA]
¡û
>W1910503037
FYBZ01000068
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
89142
89227
+
Leu
TAA
[ENA]
¡û
>W1910503044
FYCA01000010
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
89
174
+
Leu
TAA
[ENA]
¡û
>W1910503095
FYCB01000061
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
21833
21748
-
Leu
TAA
[ENA]
¡û
>W1910503101
FYCC01000001
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910503141
FYCD01000014
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
63144
63059
-
Leu
TAA
[ENA]
¡û
>W1910503180
FYCE01000038
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
89
174
+
Leu
TAA
[ENA]
¡û
>W1910503196
FYCF01000006
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910503264
FYCG01000047
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
82324
82239
-
Leu
TAA
[ENA]
¡û
>W1910503267
FYCH01000003
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
68301
68386
+
Leu
TAA
[ENA]
¡û
>W1910503325
FYCI01000045
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
69362
69277
-
Leu
TAA
[ENA]
¡û
>W1910503530
FYCM01000187
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
13802
13887
+
Leu
TAA
[ENA]
¡û
>W1910503541
FYCN01000064
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
12879
12794
-
Leu
TAA
[ENA]
¡û
>W1910503560
FYCO01000018
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
88585
88670
+
Leu
TAA
[ENA]
¡û
>W1910503591
FYCP01000001
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
34700
34615
-
Leu
TAA
[ENA]
¡û
>W1910503652
FYCR01000365
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
1313
1228
-
Leu
TAA
[ENA]
¡û
>W1910503654
FYCS01000001
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910503696
FYCT01000012
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
68301
68386
+
Leu
TAA
[ENA]
¡û
>W1910503733
FYCU01000102
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
34146
34061
-
Leu
TAA
[ENA]
¡û
>W1910503750
FYCV01000054
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
7228
7313
+
Leu
TAA
[ENA]
¡û
>W1910503802
FYCW01000043
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910503837
FYCX01000052
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
90954
91039
+
Leu
TAA
[ENA]
¡û
>W1910503864
FYCY01000031
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910503884
FYCZ01000007
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
68301
68386
+
Leu
TAA
[ENA]
¡û
>W1910503946
FYDA01000069
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
89037
89122
+
Leu
TAA
[ENA]
¡û
>W1910503955
FYDB01000002
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
71678
71593
-
Leu
TAA
[ENA]
¡û
>W1910504024
FYDC01000041
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
63143
63058
-
Leu
TAA
[ENA]
¡û
>W1910504131
FYDF01000125
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
13794
13879
+
Leu
TAA
[ENA]
¡û
>W1910505679
FYEO01000040
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
1240
1155
-
Leu
TAA
[ENA]
¡û
>W1910576495
JSCD01000008
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
94741
94826
+
Leu
TAA
[ENA]
¡û
>W1910576633
JSWL01000007
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
73850
73935
+
Leu
TAA
[ENA]
¡û
>W1910809496
MUHE01000014
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
71864
71779
-
Leu
TAA
[ENA]
¡û
>SRA1003309
SRR002326.381338
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
333
246
-
Leu
TAA
[SRA]
>C151018529
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
496151
496064
-
Leu
TAA
[Ensembl]
¡û
>C151018577
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
481617
481530
-
Leu
TAA
[Ensembl]
¡û
>C151030366
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
495899
495812
-
Leu
TAA
[Ensembl]
¡û
>C151038990
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
433594
433507
-
Leu
TAA
[Ensembl]
¡û
>C151039028
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
424716
424629
-
Leu
TAA
[Ensembl]
¡û
>C151039065
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
435257
435170
-
Leu
TAA
[Ensembl]
¡û
>C151039555
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
421646
421559
-
Leu
TAA
[Ensembl]
¡û
>C151065088
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
479135
479048
-
Leu
TAA
-
¡û
>C151065136
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
478929
478842
-
Leu
TAA
-
¡û
>C151072388
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
1319088
1319175
+
Leu
TAA
-
¡û
>W1511357153
JRWA01000006
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
260471
260384
-
Leu
TAA
[ENA]
¡û
>W1511357182
JRWB01000013
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
190057
189970
-
Leu
TAA
[ENA]
¡û
>W1511357231
JRWC01000003
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
266812
266725
-
Leu
TAA
[ENA]
¡û
>W1511357297
JRWD01000101
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
69150
69237
+
Leu
TAA
[ENA]
¡û
>W1511357344
JRWE01000104
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
69148
69235
+
Leu
TAA
[ENA]
¡û
>W1511357391
JRWF01000097
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
69161
69248
+
Leu
TAA
[ENA]
¡û
>C161024455
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
479119
479032
-
Leu
TAA
-
¡û
>C161024503
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
479616
479529
-
Leu
TAA
-
¡û
>C161024551
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
479661
479574
-
Leu
TAA
-
¡û
>W1610062194
BCNG01000020
Bacteroidota
Flavobacterium psychrophilum [BCNG]
1298
1211
-
Leu
TAA
[ENA]
¡û
>W1610764395
LNNF01000169
Bacteroidota
Flavobacterium psychrophilum [LNNF]
95216
95303
+
Leu
TAA
[ENA]
¡û
>W1610772907
LNTP01000157
Bacteroidota
Flavobacterium psychrophilum [LNTP]
41606
41693
+
Leu
TAA
[ENA]
¡û
>W1610772950
LNTQ01000128
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
7760
7673
-
Leu
TAA
[ENA]
¡û
>W1610895186
LRTL01000005
Bacteroidota
Flavobacterium psychrophilum [LRTL]
68975
69062
+
Leu
TAA
[ENA]
¡û
>W1710059735
BCNG01000020
Bacteroidota
Flavobacterium psychrophilum [BCNG]
1298
1211
-
Leu
TAA
[ENA]
¡û
>W1710087876
BDSH01000050
Bacteroidota
Flavobacterium psychrophilum [BDSH]
1297
1210
-
Leu
TAA
[ENA]
¡û
>W1710507328
FMVE01000008
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
90283
90370
+
Leu
TAA
[ENA]
¡û
>W1710555831
FOJT01000004
Bacteroidota
Flavobacterium swingsii [FOJT]
354625
354712
+
Leu
TAA
[ENA]
¡û
Identical group No.93360 (1 seq.)
>SRA1003340
SRR002326.401971
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
72
159
+
Leu
TAA
[SRA]
Identical group No.93361 (1 seq.)
>SRA1003358
SRR002326.410170
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
126
213
+
Leu
TAA
[SRA]
Identical group No.123065 (3 seq.)
>SRA1002914
SRR002326.99012
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
152
66
-
Leu
TAA
[SRA]
>SRA1003536
SRR002327.6623
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
95
181
+
Leu
TAA
[SRA]
>SRA1003946
SRR002328.56099
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
13
99
+
Leu
TAA
[SRA]
Identical group No.123069 (2 seq.)
>SRA1002956
SRR002326.123889
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
160
+
Leu
TAA
[SRA]
>SRA1004315
SRR002328.269228
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
167
253
+
Leu
TAA
[SRA]
Identical group No.123078 (1 seq.)
>SRA1003434
SRR002326.463763
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
187
103
-
Leu
TAA
[SRA]
Identical group No.129524 (1 seq.)
>SRA1003824
SRR002327.212654
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
161
75
-
Leu
TAA
[SRA]
Identical group No.139297 (1 seq.)
>SRA1003930
SRR002328.44503
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
91
177
+
Leu
TAA
[SRA]
Identical group No.139300 (1 seq.)
>SRA1004148
SRR002328.170888
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
26
112
+
Leu
TAA
[SRA]
Identical group No.160420 (1 seq.)
>SRA1002808
SRR002326.31360
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
91
8
-
Leu
TAA
[SRA]
Identical group No.160421 (1 seq.)
>SRA1002809
SRR002326.31392
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
235
150
-
Leu
TAA
[SRA]
Identical group No.164410 (1 seq.)
>SRA1003605
SRR002327.65260
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
143
228
+
Leu
TAA
[SRA]
Identical group No.190262 (1 seq.)
>SRA1003016
SRR002326.152871
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
186
270
+
Leu
TAA
[SRA]
Identical group No.190275 (1 seq.)
>SRA1003488
SRR002326.498148
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
121
205
+
Leu
TAA
[SRA]
Identical group No.196039 (3 seq.)
>W1710861577
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1053089
1053173
+
Leu
TAA
[ENA]
¡û
>SRA1003637
SRR002327.84025
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
90
174
+
Leu
TAA
[SRA]
>W1610723923
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1053089
1053173
+
Leu
TAA
[ENA]
¡û
Identical group No.229628 (1 seq.)
>SRA1003250
SRR002326.339610
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
129
48
-
Leu
TAA
[SRA]
Identical group No.233129 (1 seq.)
>SRA1003882
SRR002328.5489
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
149
68
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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