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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247853 (1 seq.)
>SRA1003435
SRR002326.464357
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
221
144
-
Arg
TCG
[SRA]
Identical group No.308411 (3 seq.)
>WENV180019948
FTCS01002455
[FTCS] metagenome; soil
943
1017
+
Arg
TCG
[ENA]
¢þ
>WENV180022195
FTFT01002645
[FTFT] metagenome; soil
1196
1272
+
Arg
TCG
[ENA]
¢þ
>SRA1004147
SRR002328.169807
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
239
163
-
Arg
TCG
[SRA]
Identical group No.506916 (1 seq.)
>SRA1003085
SRR002326.188389
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
177
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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