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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180603 (52 seq.)
>W131145060
AQFV01000021
Bacteroidota
Parabacteroides sp. ASF519 [AQFV]
462783
462699
-
Leu
CAG
[ENA]
¡û
>W131195453
ASSQ01000009
Bacteroidota
Parabacteroides goldsteinii dnLKV18 [ASSQ]
6077
5993
-
Leu
CAG
[ENA]
¡û
>W131221117
AUAE01000029
Bacteroidota
Parabacteroides gordonii DSM 23371 [AUAE]
26308
26224
-
Leu
CAG
[ENA]
¡û
>W141008364
AGZO01000014
Bacteroidota
Parabacteroides goldsteinii CL02T12C30 [AGZO]
422412
422496
+
Leu
CAG
[ENA]
¡û
>WENV180132324
OATI01000004
[OATI] human gut metagenome; faeces
286212
286296
+
Leu
CAG
[ENA]
¢þ
>WENV180147847
OAUH01011237
[OAUH] human gut metagenome; faeces
16
100
+
Leu
CAG
[ENA]
¢þ
>WENV180171865
OAVX01000049
[OAVX] human gut metagenome; faeces
123942
124026
+
Leu
CAG
[ENA]
¢þ
>WENV180470383
OBYN01000271
[OBYN] human gut metagenome; faeces
1759
1675
-
Leu
CAG
[ENA]
¢þ
>WENV180473540
OBYR01000395
[OBYR] human gut metagenome; faeces
2886
2802
-
Leu
CAG
[ENA]
¢þ
>WENV180501208
OCAK01000324
[OCAK] human gut metagenome; faeces
4159
4075
-
Leu
CAG
[ENA]
¢þ
>WENV180526216
OCHI01008564
[OCHI] human gut metagenome; human gut
3360
3276
-
Leu
CAG
[ENA]
¢þ
>WENV180745459
ODHK01150477
[ODHK] human metagenome; G_DNA_Stool
81
165
+
Leu
CAG
[ENA]
¢þ
>WENV180827456
ODKA01000317
[ODKA] human metagenome; G_DNA_Stool
30914
30830
-
Leu
CAG
[ENA]
¢þ
>WENV180827697
ODKA01000802
[ODKA] human metagenome; G_DNA_Stool
19936
19854
-
Leu
CAG
[ENA]
¢þ
>WENV181245756
OFFJ01001669
[OFFJ] mouse gut metagenome; faeces
8546
8462
-
Leu
CAG
[ENA]
¢þ
>WENV181250635
OFFN01050845
[OFFN] mouse gut metagenome; faeces
71
155
+
Leu
CAG
[ENA]
¢þ
>WENV181474277
OGFC01004864
[OGFC] metagenome; Human gut stool
4076
3992
-
Leu
CAG
[ENA]
¢þ
>WENV181543131
OGIE01006977
[OGIE] metagenome; Human gut stool
44
128
+
Leu
CAG
[ENA]
¢þ
>WENV181682130
OGOU01002892
[OGOU] human gut metagenome; faeces
68
152
+
Leu
CAG
[ENA]
¢þ
>WENV181703224
OGPJ01004746
[OGPJ] human gut metagenome; faeces
3160
3244
+
Leu
CAG
[ENA]
¢þ
>WENV181734718
OGQF01006168
[OGQF] human gut metagenome; faeces
73
157
+
Leu
CAG
[ENA]
¢þ
>WENV181795310
OGRT01000010
[OGRT] human gut metagenome; faeces
139411
139327
-
Leu
CAG
[ENA]
¢þ
>WENV181897494
OGXT01000268
[OGXT] human gut metagenome; faeces
62680
62764
+
Leu
CAG
[ENA]
¢þ
>WENV181908409
OGYB01000010
[OGYB] human gut metagenome; faeces
57645
57561
-
Leu
CAG
[ENA]
¢þ
>WENV181915337
OGYF01005259
[OGYF] human gut metagenome; faeces
3928
4012
+
Leu
CAG
[ENA]
¢þ
>WENV181970535
OGZX01017123
[OGZX] human gut metagenome; faeces
6
90
+
Leu
CAG
[ENA]
¢þ
>WENV181992191
OHAQ01024768
[OHAQ] human gut metagenome; faeces
34
118
+
Leu
CAG
[ENA]
¢þ
>WENV182143574
OHKV01004572
[OHKV] human gut metagenome; feces
3159
3075
-
Leu
CAG
[ENA]
¢þ
>WENV182764534
OJRP01031715
[OJRP] human gut metagenome; stool sample
682
598
-
Leu
CAG
[ENA]
¢þ
>WENV182885798
OKSC01027044
[OKSC] human gut metagenome; faeces
30
114
+
Leu
CAG
[ENA]
¢þ
>WENV183038020
OLGB01000056
[OLGB] human gut metagenome; faeces
5559
5475
-
Leu
CAG
[ENA]
¢þ
>WENV183041438
OLGD01000725
[OLGD] human gut metagenome; faeces
4237
4153
-
Leu
CAG
[ENA]
¢þ
>WENV183072021
OLIT01000089
[OLIT] human gut metagenome; feces
92935
93019
+
Leu
CAG
[ENA]
¢þ
>WENV183079525
OLIX01036904
[OLIX] human gut metagenome; feces
592
508
-
Leu
CAG
[ENA]
¢þ
>WENV183564790
OOBZ01000349
[OOBZ] human gut metagenome; human gut
37800
37716
-
Leu
CAG
[ENA]
¢þ
>WENV183587192
OOCU01000006
[OOCU] human gut metagenome; human gut
17194
17110
-
Leu
CAG
[ENA]
¢þ
>WENV183754068
PPYE01082922
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1208
1292
+
Leu
CAG
[ENA]
¢þ
>W1910279801
FQSE01000008
Bacteroidota
Parabacteroides timonensis Marseille-P3136 Marseille-P3236 [FQSE]
643592
643676
+
Leu
CAG
[ENA]
¡û
>W1911728507
QTMM01000008
Bacteroidota
Parabacteroides sp. AF17-3 [QTMM]
271487
271571
+
Leu
CAG
[ENA]
¡û
>SRA1001617
SRR001074.29331
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
23
106
+
Leu
CAG
[SRA]
>W1810818983
QSDP01000112
Bacteroidota
Parabacteroides sp. AM58-2XD [QSDP]
18696
18612
-
Leu
CAG
[ENA]
¡û
>W1810842839
QSWF01000010
Bacteroidota
Parabacteroides gordonii OM02-37 [QSWF]
237142
237226
+
Leu
CAG
[ENA]
¡û
>W1810876393
QUGR01000001
Bacteroidota
Parabacteroides sp. AF18-52 [QUGR]
672457
672373
-
Leu
CAG
[ENA]
¡û
>W1810877211
QUHH01000001
Bacteroidota
Parabacteroides sp. AF14-59 [QUHH]
153054
152970
-
Leu
CAG
[ENA]
¡û
>W1810881224
QUKD01000001
Bacteroidota
Parabacteroides sp. TM07-1AC [QUKD]
638777
638693
-
Leu
CAG
[ENA]
¡û
>W1511682229
LFJV01000056
Bacteroidota
Parabacteroides goldsteinii 910340 [LFJV]
24161
24245
+
Leu
CAG
[ENA]
¡û
>W1610004000
AGES01000003
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
1358642
1358558
-
Leu
CAG
[ENA]
¡û
>W1610018340
AQHV01000014
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [AQHV]
581771
581855
+
Leu
CAG
[ENA]
¡û
>W1610018412
AQHW01000017
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
452136
452220
+
Leu
CAG
[ENA]
¡û
>W1710004509
AGES01000003
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
1358642
1358558
-
Leu
CAG
[ENA]
¡û
>W1710015250
AQHV01000014
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [AQHV]
581771
581855
+
Leu
CAG
[ENA]
¡û
>W1710015322
AQHW01000017
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
452136
452220
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK