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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275950 (28 seq.)
>W1711503797
MKTY01000014
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
22761
22835
+
Asp
GTC
[ENA]
¡û
>WENV181308235
OFIS01001351
[OFIS] sludge metagenome; sludge
295
221
-
Asp
GTC
[ENA]
¢þ
>WENV181308254
OFIS01001630
[OFIS] sludge metagenome; sludge
1469
1395
-
Asp
GTC
[ENA]
¢þ
>WENV181402494
OFTY01002721
[OFTY] sludge metagenome; sludge
4038
3964
-
Asp
GTC
[ENA]
¢þ
>WENV181402521
OFTY01003203
[OFTY] sludge metagenome; sludge
3981
4055
+
Asp
GTC
[ENA]
¢þ
>ENV08001522
ABNG01002864
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
4
78
+
Asp
GTC
[ENA]
¡û
>WENV170983272
MWVV01016896
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1728
1652
-
Asp
GTC
[ENA]
¢þ
>WENV170983626
MWVV01062314
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
384
310
-
Asp
GTC
[ENA]
¢þ
>WENV170983795
MWVV01093729
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
23
99
+
Asp
GTC
[ENA]
¢þ
>W1911775056
QXMH01000001
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
697414
697340
-
Asp
GTC
[ENA]
¡û
>W1911775057
QXMH01000001
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
632030
631956
-
Asp
GTC
[ENA]
¡û
>W1911787336
QXZY01000003
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
102538
102612
+
Asp
GTC
[ENA]
¡û
>W1911787337
QXZY01000003
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
102713
102787
+
Asp
GTC
[ENA]
¡û
>SRA1001616
SRR001074.23431
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
4
78
+
Asp
GTC
[SRA]
>W1810532554
QCYK01000001
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
1852369
1852443
+
Asp
GTC
[ENA]
¡û
>W1810532555
QCYK01000001
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
1908320
1908394
+
Asp
GTC
[ENA]
¡û
>W1810532606
QCYL01000002
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
3900
3826
-
Asp
GTC
[ENA]
¡û
>W1810532616
QCYL01000005
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
370029
369955
-
Asp
GTC
[ENA]
¡û
>W1810586490
QFFK01000001
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
82392
82318
-
Asp
GTC
[ENA]
¡û
>W1810586491
QFFK01000001
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
14247
14173
-
Asp
GTC
[ENA]
¡û
>W1810586531
QFFK01000009
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
1654
1580
-
Asp
GTC
[ENA]
¡û
>W1510019467
BBWV01000003
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
207197
207123
-
Asp
GTC
[ENA]
¡û
>W1610514958
FMAR01000003
Bacteroidota
Chitinophaga costaii [FMAR]
450192
450266
+
Asp
GTC
[ENA]
¡û
>W1610514963
FMAR01000005
Bacteroidota
Chitinophaga costaii [FMAR]
369840
369766
-
Asp
GTC
[ENA]
¡û
>W1710500648
FMAR01000003
Bacteroidota
Chitinophaga costaii [FMAR]
450192
450266
+
Asp
GTC
[ENA]
¡û
>W1710500653
FMAR01000005
Bacteroidota
Chitinophaga costaii [FMAR]
369840
369766
-
Asp
GTC
[ENA]
¡û
>W1710544822
FOBB01000006
Bacteroidota
Chitinophaga rupis [FOBB]
38173
38247
+
Asp
GTC
[ENA]
¡û
>W1710544823
FOBB01000006
Bacteroidota
Chitinophaga rupis [FOBB]
105375
105449
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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