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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
Anticodon = GTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300189 (3 seq.)
>ENV08001526
ABNG01016697
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
103
27
-
His
GTG
[ENA]
¡û
>SRA1001618
SRR001074.30109
Tilapia Farm, microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000162)
103
27
-
His
GTG
[SRA]
>W1710579364
FPCH01000003
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
796056
795980
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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