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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GCC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372600 (1 seq.)
>A171000322
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1321063
1320990
-
Gly
GCC
-
¡û
Identical group No.455548 (16 seq.)
>A171002530
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
984542
984616
+
Gly
GCC
-
¡û
>A171003519
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1097779
1097853
+
Gly
GCC
-
¡û
>WENV180652725
OCVV010105150
[OCVV] gut metagenome; gut
100
27
-
Gly
GCC
[ENA]
¢þ
>WENV180652726
OCVV010105150
[OCVV] gut metagenome; gut
100
27
-
Gly
GCC
[ENA]
¢þ
>WENV181607757
OGLM01022513
[OGLM] metagenome; Human gut stool
116
42
-
Gly
GCC
[ENA]
¢þ
>WENV181655634
OGOB01000277
[OGOB] metagenome; Human gut stool
113
39
-
Gly
GCC
[ENA]
¢þ
>WENV181772679
OGRD01011338
[OGRD] human gut metagenome; faeces
1143
1217
+
Gly
GCC
[ENA]
¢þ
>WENV182525518
OIWT01002724
[OIWT] human gut metagenome; faeces
16315
16241
-
Gly
GCC
[ENA]
¢þ
>WENV183045681
OLGE01019973
[OLGE] human gut metagenome; faeces
2000
1926
-
Gly
GCC
[ENA]
¢þ
>WENV183384424
OLYN01003724
[OLYN] human gut metagenome; feces
2900
2827
-
Gly
GCC
[ENA]
¢þ
>WENV183409928
OMAG01019041
[OMAG] human gut metagenome; feces
1151
1077
-
Gly
GCC
[ENA]
¢þ
>WENV183423614
OMBG01003868
[OMBG] human gut metagenome; feces
823
750
-
Gly
GCC
[ENA]
¢þ
>WENV183447949
OMCS01055816
[OMCS] human gut metagenome; feces
113
186
+
Gly
GCC
[ENA]
¢þ
>WENV183458421
OMDM01012332
[OMDM] human gut metagenome; feces
704
778
+
Gly
GCC
[ENA]
¢þ
>WENV183518060
OMNP01057960
[OMNP] human gut metagenome; feces
414
488
+
Gly
GCC
[ENA]
¢þ
>W1610011068
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
878389
878314
-
Gly
GCC
[ENA]
¡û
Identical group No.456288 (6 seq.)
>A171003716
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1022378
1022305
-
Gly
GCC
-
¡û
>WENV181035968
ODXP01000088
[ODXP] human metagenome; G_DNA_Stool
34354
34281
-
Gly
GCC
[ENA]
¢þ
>WENV181088756
OEBA01004584
[OEBA] human metagenome; G_DNA_Stool
4464
4537
+
Gly
GCC
[ENA]
¢þ
>WENV181702103
OGPH01018040
[OGPH] human gut metagenome; faeces
793
720
-
Gly
GCC
[ENA]
¢þ
>WENV182180992
OHNO01047102
[OHNO] human gut metagenome; feces
343
270
-
Gly
GCC
[ENA]
¢þ
>WENV182193934
OHPB01043592
[OHPB] human gut metagenome; feces
624
697
+
Gly
GCC
[ENA]
¢þ
Identical group No.488116 (7 seq.)
>A171007756
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
689999
689927
-
Gly
GCC
-
¡û
>A171007793
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
694752
694680
-
Gly
GCC
-
¡û
>W141000145
AADL01002065
Unclassified
mine drainage metagenome Group III [AADL]
4081
4153
+
Gly
GCC
[ENA]
¡û
>W141000154
AADL01002249
Unclassified
mine drainage metagenome Group III [AADL]
574
646
+
Gly
GCC
[ENA]
¡û
>ENV09002149
ACXJ01010523
Mine drainage metagenome Contig1
972
1044
+
Gly
GCC
[ENA]
¡û
>WENV077154
AADL01002065
Acid Mine Drainage microbial communities from Richmond mine
4081
4156
+
Gly
GCC
[ENA]
>WENV077162
AADL01002249
Acid Mine Drainage microbial communities from Richmond mine
574
649
+
Gly
GCC
[ENA]
Identical group No.514985 (3 seq.)
>A171006526
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1426346
1426272
-
Gly
GCC
-
¡û
>WENV180671369
OCVV011316437
[OCVV] gut metagenome; gut
2907
2833
-
Gly
GCC
[ENA]
¢þ
>WENV180671370
OCVV011316437
[OCVV] gut metagenome; gut
2907
2833
-
Gly
GCC
[ENA]
¢þ
Identical group No.526076 (6 seq.)
>A171001372
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
934319
934247
-
Gly
GCC
-
¡û
>A171002883
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1010380
1010307
-
Gly
GCC
-
¡û
>WENV180648311
OCSI01161918
[OCSI] metagenome; diffuse fluid
104
177
+
Gly
GCC
[ENA]
¢þ
>W1610000679
ABSD01000044
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
6818
6890
+
Gly
GCC
[ENA]
¡û
>W1610000682
ABSD01000045
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
6818
6890
+
Gly
GCC
[ENA]
¡û
>W1610001704
ADFG01000018
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
5839
5767
-
Gly
GCC
[ENA]
¡û
Identical group No.541352 (1 seq.)
>At2016
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
551951
552023
+
Gly
GCC
[Ensembl]
¡û
Identical group No.564828 (1 seq.)
>At1747
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1460507
1460579
+
Gly
GCC
[Ensembl]
¡û
Identical group No.582490 (2 seq.)
>At2000
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1103504
1103432
-
Gly
GCC
[Ensembl]
¡û
>W1911681172
QJSM01000026
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
120618
120546
-
Gly
GCC
[ENA]
¡û
Identical group No.640519 (1 seq.)
>A173000303
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
602440
602514
+
Gly
GCC
-
¡û
Identical group No.647544 (1 seq.)
>A171005744
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
646301
646228
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK