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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256437 (1 seq.)
>A171000312
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1445027
1444951
-
Thr
GGT
-
¡û
Identical group No.352467 (1 seq.)
>At2017
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
567610
567683
+
Thr
GGT
[Ensembl]
¡û
Identical group No.373687 (1 seq.)
>At1775
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1217228
1217155
-
Thr
GGT
[Ensembl]
¡û
Identical group No.526071 (5 seq.)
>A171001349
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
39534
39607
+
Thr
GGT
-
¡û
>A171002864
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
39986
40059
+
Thr
GGT
-
¡û
>W1610000645
ABSD01000014
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
29218
29291
+
Thr
GGT
[ENA]
¡û
>W1610000672
ABSD01000038
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
11792
11719
-
Thr
GGT
[ENA]
¡û
>W1610001681
ADFG01000001
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
71560
71633
+
Thr
GGT
[ENA]
¡û
Identical group No.604602 (1 seq.)
>At1999
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1079396
1079324
-
Thr
GGT
[Ensembl]
¡û
Identical group No.655452 (15 seq.)
>A171002544
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1376101
1376029
-
Thr
GGT
-
¡û
>A171003532
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1581862
1581788
-
Thr
GGT
-
¡û
>WENV180327041
OBKS01370033
[OBKS] human gut metagenome; human gut
13
87
+
Thr
GGT
[ENA]
¢þ
>WENV181606834
OGLM01001369
[OGLM] metagenome; Human gut stool
18403
18329
-
Thr
GGT
[ENA]
¢þ
>WENV181655723
OGOB01000767
[OGOB] metagenome; Human gut stool
7042
6968
-
Thr
GGT
[ENA]
¢þ
>WENV181772402
OGRD01002683
[OGRD] human gut metagenome; faeces
4478
4404
-
Thr
GGT
[ENA]
¢þ
>WENV182524082
OIWT01000033
[OIWT] human gut metagenome; faeces
35532
35458
-
Thr
GGT
[ENA]
¢þ
>WENV183045245
OLGE01007294
[OLGE] human gut metagenome; faeces
1064
990
-
Thr
GGT
[ENA]
¢þ
>WENV183382690
OLYL01009067
[OLYL] human gut metagenome; feces
1111
1185
+
Thr
GGT
[ENA]
¢þ
>WENV183409719
OMAG01005757
[OMAG] human gut metagenome; feces
980
1054
+
Thr
GGT
[ENA]
¢þ
>WENV183438873
OMCF01009067
[OMCF] human gut metagenome; feces
1111
1185
+
Thr
GGT
[ENA]
¢þ
>WENV183458490
OMDM01018496
[OMDM] human gut metagenome; feces
600
526
-
Thr
GGT
[ENA]
¢þ
>WENV183517748
OMNP01010604
[OMNP] human gut metagenome; feces
890
816
-
Thr
GGT
[ENA]
¢þ
>W1610011059
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
394306
394380
+
Thr
GGT
[ENA]
¡û
>W1610799743
LOPS01000004
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
2139
2065
-
Thr
GGT
[ENA]
¡û
Identical group No.655759 (12 seq.)
>A171003687
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
115184
115258
+
Thr
GGT
-
¡û
>WENV180469926
OBYM01027670
[OBYM] human gut metagenome; faeces
735
661
-
Thr
GGT
[ENA]
¢þ
>WENV180620425
OCQB01075189
[OCQB] human gut metagenome; human gut
66
140
+
Thr
GGT
[ENA]
¢þ
>WENV181036523
ODXP01001097
[ODXP] human metagenome; G_DNA_Stool
12203
12129
-
Thr
GGT
[ENA]
¢þ
>WENV181089014
OEBA01009838
[OEBA] human metagenome; G_DNA_Stool
729
803
+
Thr
GGT
[ENA]
¢þ
>WENV181701875
OGPH01007448
[OGPH] human gut metagenome; faeces
3455
3381
-
Thr
GGT
[ENA]
¢þ
>WENV182058694
OHEP01044403
[OHEP] human gut metagenome; feces
686
612
-
Thr
GGT
[ENA]
¢þ
>WENV182194021
OHPB01065142
[OHPB] human gut metagenome; feces
432
358
-
Thr
GGT
[ENA]
¢þ
>WENV182212834
OHQG01009978
[OHQG] human gut metagenome; feces
1584
1658
+
Thr
GGT
[ENA]
¢þ
>WENV182538362
OIXH01086427
[OIXH] human gut metagenome; faeces
322
396
+
Thr
GGT
[ENA]
¢þ
>WENV183040083
OLGB01040226
[OLGB] human gut metagenome; faeces
936
862
-
Thr
GGT
[ENA]
¢þ
>WENV183043342
OLGD01045438
[OLGD] human gut metagenome; faeces
322
396
+
Thr
GGT
[ENA]
¢þ
Identical group No.690671 (3 seq.)
>A171006502
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
92868
92942
+
Thr
GGT
-
¡û
>WENV180668135
OCVV011252899
[OCVV] gut metagenome; gut
1087
1013
-
Thr
GGT
[ENA]
¢þ
>WENV180668136
OCVV011252899
[OCVV] gut metagenome; gut
1087
1013
-
Thr
GGT
[ENA]
¢þ
Identical group No.775786 (1 seq.)
>A171005713
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
20338
20412
+
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK