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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TGT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274412 (9 seq.)
>A171003541
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
590023
589947
-
Thr
TGT
-
¡û
>WENV180326837
OBKS01196210
[OBKS] human gut metagenome; human gut
92
168
+
Thr
TGT
[ENA]
¢þ
>WENV181606650
OGLM01000666
[OGLM] metagenome; Human gut stool
1609
1533
-
Thr
TGT
[ENA]
¢þ
>WENV181655852
OGOB01002392
[OGOB] metagenome; Human gut stool
3500
3576
+
Thr
TGT
[ENA]
¢þ
>WENV181772594
OGRD01007815
[OGRD] human gut metagenome; faeces
571
495
-
Thr
TGT
[ENA]
¢þ
>WENV182524783
OIWT01000570
[OIWT] human gut metagenome; faeces
38233
38309
+
Thr
TGT
[ENA]
¢þ
>WENV183045688
OLGE01020379
[OLGE] human gut metagenome; faeces
1000
1076
+
Thr
TGT
[ENA]
¢þ
>WENV183458574
OMDM01029782
[OMDM] human gut metagenome; feces
412
488
+
Thr
TGT
[ENA]
¢þ
>W1610011043
AMSE01000002
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
277602
277678
+
Thr
TGT
[ENA]
¡û
Identical group No.275025 (10 seq.)
>A171003718
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
785196
785120
-
Thr
TGT
-
¡û
>WENV180470056
OBYM01047855
[OBYM] human gut metagenome; faeces
343
419
+
Thr
TGT
[ENA]
¢þ
>WENV180963459
ODUN01186969
[ODUN] human metagenome; G_DNA_Stool
144
68
-
Thr
TGT
[ENA]
¢þ
>WENV181035829
ODXP01000012
[ODXP] human metagenome; G_DNA_Stool
143171
143095
-
Thr
TGT
[ENA]
¢þ
>WENV181089092
OEBA01012244
[OEBA] human metagenome; G_DNA_Stool
1096
1172
+
Thr
TGT
[ENA]
¢þ
>WENV182058757
OHEP01058636
[OHEP] human gut metagenome; feces
245
321
+
Thr
TGT
[ENA]
¢þ
>WENV182193996
OHPB01059114
[OHPB] human gut metagenome; feces
396
472
+
Thr
TGT
[ENA]
¢þ
>WENV182535778
OIXH01000001
[OIXH] human gut metagenome; faeces
27836
27912
+
Thr
TGT
[ENA]
¢þ
>WENV183038994
OLGB01002333
[OLGB] human gut metagenome; faeces
1264
1340
+
Thr
TGT
[ENA]
¢þ
>WENV183040423
OLGD01000006
[OLGD] human gut metagenome; faeces
27836
27912
+
Thr
TGT
[ENA]
¢þ
Identical group No.338086 (5 seq.)
>A171001352
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
200047
200121
+
Thr
TGT
-
¡û
>A179000341
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
765057
764930
-
Thr
TGT
-
¡û
>W1610000641
ABSD01000006
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
118604
118678
+
Thr
TGT
[ENA]
¡û
>W1610000668
ABSD01000036
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
9465
9391
-
Thr
TGT
[ENA]
¡û
>W1610001684
ADFG01000002
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
54543
54617
+
Thr
TGT
[ENA]
¡û
Identical group No.399298 (1 seq.)
>A171006509
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
710163
710239
+
Thr
TGT
-
¡û
Identical group No.446340 (1 seq.)
>A171005746
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
350056
349980
-
Thr
TGT
-
¡û
Identical group No.490150 (3 seq.)
>A171007746
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1898780
1898853
+
Thr
TGT
-
¡û
>A171007783
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1843588
1843660
+
Thr
TGT
-
¡û
>ENV09002247
ACXJ01012050
Mine drainage metagenome Contig1
149
77
-
Thr
TGT
[ENA]
¡û
Identical group No.541349 (2 seq.)
>At2006
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1398765
1398693
-
Thr
TGT
[Ensembl]
¡û
>At2011
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
271409
271481
+
Thr
TGT
[Ensembl]
¡û
Identical group No.563619 (1 seq.)
>A171000290
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
9195
9267
+
Thr
TGT
-
¡û
Identical group No.564830 (1 seq.)
>At1755
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
404862
404790
-
Thr
TGT
[Ensembl]
¡û
Identical group No.639790 (1 seq.)
>C151068548
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
719264
719339
+
Thr
TGT
-
¡û
Identical group No.720688 (1 seq.)
>A171002555
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
574820
574748
-
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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