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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
metagenomic water samples (SRP000427)
Anticodon = TCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285996 (20 seq.)
>W141023466
AJXL01000039
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
270
196
-
Arg
TCG
[ENA]
¡û
>WENV180593953
OCOY01005929
[OCOY] marine metagenome; ENVO:00002010
719
793
+
Arg
TCG
[ENA]
¢þ
>WENV181324168
OFLC01002303
[OFLC] marine metagenome; melt pond
1020
946
-
Arg
TCG
[ENA]
¢þ
>WENV170559509
CXWL01126392
[CXWL] groundwater metagenome; biofilm material
3316
3240
-
Arg
TCG
[ENA]
¢þ
>W141820208
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
1735081
1735155
+
Arg
TCG
[ENA]
¡û
>W1810072167
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
1602853
1602927
+
Arg
TCG
[ENA]
¡û
>W1810156550
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
283228
283154
-
Arg
TCG
[ENA]
¡û
>SRA1004359
SRR006906.9820
metagenomic water samples (SRP000427)
85
159
+
Arg
TCG
[SRA]
>SRA1004948
SRR006906.194189
metagenomic water samples (SRP000427)
90
16
-
Arg
TCG
[SRA]
>W1810365435
PVUB01000003
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
234124
234198
+
Arg
TCG
[ENA]
¡û
>W1810722597
QNUX01000006
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
99610
99684
+
Arg
TCG
[ENA]
¡û
>W1810723010
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
1151469
1151543
+
Arg
TCG
[ENA]
¡û
>W1810763366
QQBA01000007
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
29853
29779
-
Arg
TCG
[ENA]
¡û
>W1511390913
JSYM01000001
Bacteroidota
Flavobacterium sp. AED [JSYM]
1718318
1718394
+
Arg
TCG
[ENA]
¡û
>W121034200
AHKF01000016
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
54791
54867
+
Arg
TCG
[ENA]
¡û
>W1710528035
FNMV01000009
Bacteroidota
Flavobacterium degerlachei [FNMV]
53375
53299
-
Arg
TCG
[ENA]
¡û
>W1710539670
FNVP01000002
Bacteroidota
Flavobacterium urumqiense [FNVP]
37806
37730
-
Arg
TCG
[ENA]
¡û
>W1710548142
FODN01000001
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
337867
337791
-
Arg
TCG
[ENA]
¡û
>W1710585721
FQWO01000004
Bacteroidota
Flavobacterium granuli [FQWO]
234126
234200
+
Arg
TCG
[ENA]
¡û
>W1710592406
FRCL01000001
Bacteroidota
Flavobacterium xinjiangense [FRCL]
227169
227095
-
Arg
TCG
[ENA]
¡û
Identical group No.343897 (9 seq.)
>WENV181395773
OFSB01002262
[OFSB] freshwater metagenome; Freshwater Lake
1425
1349
-
Arg
TCG
[ENA]
¢þ
>WENV181845645
OGVX01005714
[OGVX] freshwater metagenome; freshwater
123
47
-
Arg
TCG
[ENA]
¢þ
>WENV181847791
OGVZ01000096
[OGVZ] freshwater metagenome; freshwater
11043
11117
+
Arg
TCG
[ENA]
¢þ
>WENV181853772
OGWJ01000299
[OGWJ] freshwater metagenome; freshwater
1905
1831
-
Arg
TCG
[ENA]
¢þ
>WENV181854318
OGWK01000178
[OGWK] freshwater metagenome; freshwater
4557
4631
+
Arg
TCG
[ENA]
¢þ
>WENV182865801
OKRQ01002641
[OKRQ] freshwater metagenome; freshwater
583
657
+
Arg
TCG
[ENA]
¢þ
>WENV170626440
FUWD013222567
[FUWD] metagenome; unknown
41
117
+
Arg
TCG
[ENA]
¢þ
>SRA1005186
SRR006907.90374
metagenomic water samples (SRP000427)
94
170
+
Arg
TCG
[SRA]
>SRA1005234
SRR006907.127447
metagenomic water samples (SRP000427)
94
170
+
Arg
TCG
[SRA]
Identical group No.349128 (1 seq.)
>SRA1005124
SRR006907.46280
metagenomic water samples (SRP000427)
168
244
+
Arg
TCG
[SRA]
Identical group No.349157 (1 seq.)
>SRA1005380
SRR006907.225904
metagenomic water samples (SRP000427)
103
176
+
Arg
TCG
[SRA]
Identical group No.349161 (1 seq.)
>SRA1005406
SRR006907.253326
metagenomic water samples (SRP000427)
168
244
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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