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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassifiedviruses
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108785 (1 seq.)
>VRL181000548
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189625
189540
-
Ser
GGA
[ENA]
¡û
Identical group No.144728 (1 seq.)
>VRL181000510
KR921745
unclassifiedviruses
Mollivirus sibericum (KR921745)
249640
249723
+
Leu
CAA
[ENA]
¡û
Identical group No.147996 (1 seq.)
>VRL181000555
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188979
188894
-
Ser
GCT
[ENA]
¡û
Identical group No.232026 (1 seq.)
>VRL181000577
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
173215
173136
-
Leu
TAG
[ENA]
¡û
Identical group No.239776 (1 seq.)
>VRL181000556
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188833
188756
-
Trp
CCA
[ENA]
¡û
Identical group No.239777 (1 seq.)
>VRL181000576
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
173533
173458
-
Leu
CAG
[ENA]
¡û
Identical group No.266187 (1 seq.)
>VRL181000566
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187607
187531
-
Asp
GTC
[ENA]
¡û
Identical group No.266188 (1 seq.)
>VRL183000156
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174956
174882
-
Arg
TCT
[ENA]
¡û
Identical group No.428282 (1 seq.)
>VRL183000159
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
173132
173057
-
Leu
TAA
[ENA]
¡û
Identical group No.428284 (1 seq.)
>VRL181000545
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
190096
190020
-
Lys
CTT
[ENA]
¡û
Identical group No.428285 (1 seq.)
>VRL181000546
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189996
189922
-
Ile
GAT
[ENA]
¡û
Identical group No.428286 (1 seq.)
>VRL181000557
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188753
188678
-
Glu
CTC
[ENA]
¡û
Identical group No.428287 (1 seq.)
>VRL181000558
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188674
188600
-
Cys
GCA
[ENA]
¡û
Identical group No.428288 (1 seq.)
>VRL181000560
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188111
188038
-
Pro
TGG
[ENA]
¡û
Identical group No.428289 (1 seq.)
>VRL181000561
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187989
187914
-
Pro
CGG
[ENA]
¡û
Identical group No.428290 (1 seq.)
>VRL181000572
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
186341
186267
-
Arg
ACG
[ENA]
¡û
Identical group No.428291 (1 seq.)
>VRL181000573
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174231
174156
-
Arg
CCT
[ENA]
¡û
Identical group No.428292 (1 seq.)
>VRL181000575
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174079
174003
-
Met
CAT
[ENA]
¡û
Identical group No.539787 (6 seq.)
>WENV180354931
OBNE01036398
[OBNE] groundwater metagenome; groundwater
338
263
-
Ala
TGC
[ENA]
¢þ
>WENV183687459
ORMF011148134
[ORMF] groundwater metagenome; groundwater
264
189
-
Ala
TGC
[ENA]
¢þ
>WENV170227749
CEQF01130296
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
333
258
-
Ala
TGC
[ENA]
¢þ
>WENV170765902
LWDU01039861
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2220
2145
-
Ala
TGC
[ENA]
¢þ
>WENV170917150
MDTE01188452
[MDTE] marine metagenome; seawater
81
6
-
Ala
TGC
[ENA]
¢þ
>VRL181000570
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
186545
186470
-
Ala
TGC
[ENA]
¡û
Identical group No.561418 (1 seq.)
>VRL181000395
KC977571
unclassifiedviruses
Pandoravirus salinus (KC977571)
1665818
1665746
-
Trp
CCA
[ENA]
¡û
Identical group No.627219 (1 seq.)
>VRL181000547
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189877
189805
-
Lys
TTT
[ENA]
¡û
Identical group No.627220 (1 seq.)
>VRL181000549
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189539
189466
-
Gln
TTG
[ENA]
¡û
Identical group No.627221 (1 seq.)
>VRL181000550
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189465
189393
-
Gln
CTG
[ENA]
¡û
Identical group No.627222 (1 seq.)
>VRL181000551
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189389
189317
-
Thr
TGT
[ENA]
¡û
Identical group No.627223 (1 seq.)
>VRL181000552
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189316
189244
-
Asn
GTT
[ENA]
¡û
Identical group No.627224 (1 seq.)
>VRL181000554
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189062
188990
-
Thr
CGT
[ENA]
¡û
Identical group No.627225 (1 seq.)
>VRL181000559
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188280
188204
-
Glu
TTC
[ENA]
¡û
Identical group No.627226 (1 seq.)
>VRL181000562
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187911
187836
-
Met
CAT
[ENA]
¡û
Identical group No.627227 (1 seq.)
>VRL181000563
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187835
187763
-
Gly
GCC
[ENA]
¡û
Identical group No.627228 (1 seq.)
>VRL181000564
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187758
187685
-
His
GTG
[ENA]
¡û
Identical group No.627229 (1 seq.)
>VRL181000568
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
186897
186825
-
Ala
GGC
[ENA]
¡û
Identical group No.627230 (1 seq.)
>VRL181000574
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174153
174081
-
Gly
TCC
[ENA]
¡û
Identical group No.627231 (1 seq.)
>VRL181000578
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
172860
172788
-
Leu
CAA
[ENA]
¡û
Identical group No.711656 (1 seq.)
>VRL181000665
LT706986
unclassifiedviruses
Pacmanvirus A23 (LT706986)
386791
386720
-
Ile
TAT
[ENA]
¡û
Identical group No.760714 (1 seq.)
>VRL181000553
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189239
189168
-
Thr
GGT
[ENA]
¡û
Identical group No.760715 (1 seq.)
>VRL181000565
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187681
187610
-
Gly
CCC
[ENA]
¡û
Identical group No.760716 (1 seq.)
>VRL181000567
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187526
187455
-
Phe
GAA
[ENA]
¡û
Identical group No.760717 (1 seq.)
>VRL181000569
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
186618
186547
-
Ala
CGC
[ENA]
¡û
Identical group No.760718 (1 seq.)
>VRL181000571
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
186468
186395
-
Arg
CCG
[ENA]
¡û
Identical group No.789523 (1 seq.)
>VRL0200031
X53411
unclassifiedviruses
Non-A
3861
3934
+
Gln
CTG
[ENA]
¡û
Identical group No.808947 (1 seq.)
>VRL181000394
KC977571
unclassifiedviruses
Pandoravirus salinus (KC977571)
84511
84581
+
Pro
CGG
[ENA]
¡û
Identical group No.808948 (3 seq.)
>VRL181000724
MG011689
unclassifiedviruses
Pandoravirus quercus (MG011689)
96870
96945
+
Pro
CGG
[ENA]
¡û
>VRL181000725
MG011690
unclassifiedviruses
Pandoravirus neocaledonia (MG011690)
57740
57810
+
Pro
CGG
[ENA]
¡û
>VRL181000726
MG011691
unclassifiedviruses
Pandoravirus macleodensis (MG011691)
59278
59348
+
Pro
CGG
[ENA]
¡û
Identical group No.833163 (1 seq.)
>VRL181000393
KC977570
unclassifiedviruses
Pandoravirus dulcis (KC977570)
60582
60652
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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