This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CCC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.718786 (5 seq.)
>WENV181967845
OGZV01031919
[OGZV] human gut metagenome; faeces
591
662
+
Gly
CCC
[ENA]
¢þ
>WENV170659233
JXWR01001993
[JXWR] soil metagenome; rice field; ambient CO2
11346
11417
+
Gly
CCC
[ENA]
¢þ
>SC0100035
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1257071
1257000
-
Gly
CCC
[ENA]
¡û
>W1610158749
FAMN01001263
Bacillota
Clostridioides difficile [FAMN]
107
36
-
Gly
CCC
[ENA]
¡û
>W1710160416
FAMN01001263
Bacillota
Clostridioides difficile [FAMN]
107
36
-
Gly
CCC
[ENA]
¡û
Identical group No.735087 (1 seq.)
>SC0100193
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
594426
594355
-
Gly
CCC
[ENA]
¡û
Identical group No.741429 (1 seq.)
>FG090100391
AL590450
Microsporidia
Encephalitozoon_cuniculi_GB-M1
158598
158669
+
Gly
CCC
[ENA]
¡û
Identical group No.762143 (1 seq.)
>FG090300002
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
178619
178690
+
Gly
CCC
[ENA]
¡û
Identical group No.789640 (1 seq.)
>FG090100029
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
36974
37044
+
Gly
CCC
[ENA]
¡û
Identical group No.799867 (1 seq.)
>FG090100312
CR382138
Ascomycota
Debaryomyces hansenii CBS767
494149
494221
+
Gly
CCC
[ENA]
¡û
Identical group No.799870 (1 seq.)
>FG090100620
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2069486
2069558
+
Gly
CCC
[ENA]
¡û
Identical group No.803299 (1 seq.)
>FG090100566
CP000498
Ascomycota
Pichia stipitis CBS 6054
175980
175910
-
Gly
CCC
[ENA]
¡û
Identical group No.816407 (2 seq.)
>FU090900426
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
473280
473178
-
Gly
CCC
[ENA]
¡û
>FU090900429
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
226495
226387
-
Gly
CCC
[ENA]
¡û
Identical group No.826665 (1 seq.)
>FG090100485
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1538923
1538993
+
Gly
CCC
[ENA]
¡û
Identical group No.828718 (1 seq.)
>FG091100051
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1133270
1133200
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK