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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462488 (1 seq.)
>FU090900064
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
275639
275540
-
Arg
CCT
[ENA]
¡û
Identical group No.490185 (1 seq.)
>FG091100081
CP000496
Ascomycota
Pichia stipitis CBS 6054
1188314
1188242
-
Arg
CCT
[ENA]
¡û
Identical group No.541199 (2 seq.)
>FG091800017
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1471207
1471108
-
Arg
CCT
[ENA]
¡û
>FG091800018
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1477071
1476972
-
Arg
CCT
[ENA]
¡û
Identical group No.575239 (1 seq.)
>FG090100393
AL590451
Microsporidia
Encephalitozoon_cuniculi_GB-M1
158716
158788
+
Arg
CCT
[ENA]
¡û
Identical group No.604516 (1 seq.)
>FG091100173
CR382133
Ascomycota
Debaryomyces hansenii CBS767
755555
755481
-
Arg
CCT
[ENA]
¡û
Identical group No.698776 (1 seq.)
>FU090900191
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1160994
1160893
-
Arg
CCT
[ENA]
¡û
Identical group No.706736 (1 seq.)
>FG090100768
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2681646
2681717
+
Arg
CCT
[ENA]
¡û
Identical group No.718801 (2 seq.)
>WENV170659622
JXWR01015534
[JXWR] soil metagenome; rice field; ambient CO2
334
405
+
Arg
CCT
[ENA]
¢þ
>SC0100121
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
538548
538619
+
Arg
CCT
[ENA]
¡û
Identical group No.757498 (1 seq.)
>FG090100401
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
719495
719566
+
Arg
CCT
[ENA]
¡û
Identical group No.762147 (1 seq.)
>FG091100040
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1121535
1121606
+
Arg
CCT
[ENA]
¡û
Identical group No.776252 (1 seq.)
>FG090100097
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
576831
576904
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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