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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.554019 (1 seq.)
>FG092910002
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1315020
1314924
-
Pro
CGG
[ENA]
¡û
Identical group No.794849 (1 seq.)
>FG090800129
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1408270
1408380
+
Pro
CGG
[ENA]
¡û
Identical group No.803300 (1 seq.)
>FU090900312
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1899938
1899830
-
Pro
CGG
[ENA]
¡û
Identical group No.810059 (1 seq.)
>FG090100386
AL590449
Microsporidia
Encephalitozoon_cuniculi_GB-M1
55869
55939
+
Pro
CGG
[ENA]
¡û
Identical group No.819370 (1 seq.)
>FG091800012
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
721098
720992
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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